409 related articles for article (PubMed ID: 30379882)
21. Sequencing data discovery with MetaSeek.
Hoarfrost A; Brown N; Brown CT; Arnosti C
Bioinformatics; 2019 Nov; 35(22):4857-4859. PubMed ID: 31225863
[TBL] [Abstract][Full Text] [Related]
22. Goldilocks: a tool for identifying genomic regions that are 'just right'.
Nicholls SM; Clare A; Randall JC
Bioinformatics; 2016 Jul; 32(13):2047-9. PubMed ID: 27153673
[TBL] [Abstract][Full Text] [Related]
23. MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics.
Strutz J; Shebek KM; Broadbelt LJ; Tyo KEJ
Bioinformatics; 2022 Jun; 38(13):3484-3487. PubMed ID: 35595247
[TBL] [Abstract][Full Text] [Related]
24. Detecting and correcting misclassified sequences in the large-scale public databases.
Bagheri H; Severin AJ; Rajan H
Bioinformatics; 2020 Sep; 36(18):4699-4705. PubMed ID: 32579213
[TBL] [Abstract][Full Text] [Related]
25. Reactome diagram viewer: data structures and strategies to boost performance.
Fabregat A; Sidiropoulos K; Viteri G; Marin-Garcia P; Ping P; Stein L; D'Eustachio P; Hermjakob H
Bioinformatics; 2018 Apr; 34(7):1208-1214. PubMed ID: 29186351
[TBL] [Abstract][Full Text] [Related]
26. Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software.
Georgeson P; Syme A; Sloggett C; Chung J; Dashnow H; Milton M; Lonsdale A; Powell D; Seemann T; Pope B
Gigascience; 2019 Sep; 8(9):. PubMed ID: 31544213
[TBL] [Abstract][Full Text] [Related]
27. SATORI: a system for ontology-guided visual exploration of biomedical data repositories.
Lekschas F; Gehlenborg N
Bioinformatics; 2018 Apr; 34(7):1200-1207. PubMed ID: 29186292
[TBL] [Abstract][Full Text] [Related]
28. Rust-Bio: a fast and safe bioinformatics library.
Köster J
Bioinformatics; 2016 Feb; 32(3):444-6. PubMed ID: 26446134
[TBL] [Abstract][Full Text] [Related]
29. BioCoder: a benchmark for bioinformatics code generation with large language models.
Tang X; Qian B; Gao R; Chen J; Chen X; Gerstein MB
Bioinformatics; 2024 Jun; 40(Supplement_1):i266-i276. PubMed ID: 38940140
[TBL] [Abstract][Full Text] [Related]
30. pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive.
Choudhary S
F1000Res; 2019; 8():532. PubMed ID: 31114675
[TBL] [Abstract][Full Text] [Related]
31. AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Hosny A; Vera-Licona P; Laubenbacher R; Favre T
Bioinformatics; 2016 Aug; 32(15):2396-8. PubMed ID: 27153722
[TBL] [Abstract][Full Text] [Related]
32. iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.
Noor Z; Wu JX; Pascovici D; Mohamedali A; Molloy MP; Baker MS; Ranganathan S
Bioinformatics; 2019 Feb; 35(3):538-539. PubMed ID: 30052774
[TBL] [Abstract][Full Text] [Related]
33. medna-metadata: an open-source data management system for tracking environmental DNA samples and metadata.
Kimble M; Allers S; Campbell K; Chen C; Jackson LM; King BL; Silverbrand S; York G; Beard K
Bioinformatics; 2022 Sep; 38(19):4589-4597. PubMed ID: 35960154
[TBL] [Abstract][Full Text] [Related]
34. Web-based network analysis and visualization using CellMaps.
Salavert F; García-Alonso L; Sánchez R; Alonso R; Bleda M; Medina I; Dopazo J
Bioinformatics; 2016 Oct; 32(19):3041-3. PubMed ID: 27296979
[TBL] [Abstract][Full Text] [Related]
35. GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
Magge A; Weissenbacher D; O'Connor K; Tahsin T; Gonzalez-Hernandez G; Scotch M
Bioinformatics; 2020 Dec; 36(20):5120-5121. PubMed ID: 32683454
[TBL] [Abstract][Full Text] [Related]
36. Container-based bioinformatics with Pachyderm.
Novella JA; Emami Khoonsari P; Herman S; Whitenack D; Capuccini M; Burman J; Kultima K; Spjuth O
Bioinformatics; 2019 Mar; 35(5):839-846. PubMed ID: 30101309
[TBL] [Abstract][Full Text] [Related]
37. canvasDesigner: a versatile interactive high-resolution scientific multi-panel visualization toolkit.
Zhang B; Zhao S; Neuhaus I
Bioinformatics; 2018 Oct; 34(19):3419-3420. PubMed ID: 29726919
[TBL] [Abstract][Full Text] [Related]
38. Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python.
Lubbock ALR; Lopez CF
Bioinformatics; 2022 Oct; 38(20):4823-4825. PubMed ID: 36000837
[TBL] [Abstract][Full Text] [Related]
39. PyRanges: efficient comparison of genomic intervals in Python.
Stovner EB; Sætrom P
Bioinformatics; 2020 Feb; 36(3):918-919. PubMed ID: 31373614
[TBL] [Abstract][Full Text] [Related]
40. Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses.
Menegidio FB; Jabes DL; Costa de Oliveira R; Nunes LR
Bioinformatics; 2018 Feb; 34(3):514-515. PubMed ID: 28968637
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
