These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

416 related articles for article (PubMed ID: 30400809)

  • 1. Single sample scoring of molecular phenotypes.
    Foroutan M; Bhuva DD; Lyu R; Horan K; Cursons J; Davis MJ
    BMC Bioinformatics; 2018 Nov; 19(1):404. PubMed ID: 30400809
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Cross-platform comparison of immune signatures in immunotherapy-treated patients with advanced melanoma using a rank-based scoring approach.
    Mao Y; Gide TN; Adegoke NA; Quek C; Maher N; Potter A; Patrick E; Saw RPM; Thompson JF; Spillane AJ; Shannon KF; Carlino MS; Lo SN; Menzies AM; da Silva IP; Long GV; Scolyer RA; Wilmott JS
    J Transl Med; 2023 Apr; 21(1):257. PubMed ID: 37055772
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures.
    Bhuva DD; Foroutan M; Xie Y; Lyu R; Cursons J; Davis MJ
    F1000Res; 2019; 8():776. PubMed ID: 31723419
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of gene set scoring methods for reproducible evaluation of tuberculosis gene signatures.
    Wang X; VanValkenberg A; Odom AR; Ellner JJ; Hochberg NS; Salgame P; Patil P; Johnson WE
    BMC Infect Dis; 2024 Jun; 24(1):610. PubMed ID: 38902649
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of gene set scoring methods for reproducible evaluation of multiple tuberculosis gene signatures.
    Wang X; VanValkenberg A; Odom-Mabey AR; Ellner JJ; Hochberg NS; Salgame P; Patil P; Johnson WE
    bioRxiv; 2023 Jan; ():. PubMed ID: 36711818
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data.
    Rue-Albrecht K; McGettigan PA; Hernández B; Nalpas NC; Magee DA; Parnell AC; Gordon SV; MacHugh DE
    BMC Bioinformatics; 2016 Mar; 17():126. PubMed ID: 26968614
    [TBL] [Abstract][Full Text] [Related]  

  • 7. NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis.
    Jeggari A; Alexeyenko A
    BMC Bioinformatics; 2017 Mar; 18(Suppl 5):118. PubMed ID: 28361684
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Stable gene expression for normalisation and single-sample scoring.
    Bhuva DD; Cursons J; Davis MJ
    Nucleic Acids Res; 2020 Nov; 48(19):e113. PubMed ID: 32997146
    [TBL] [Abstract][Full Text] [Related]  

  • 9. irGSEA: the integration of single-cell rank-based gene set enrichment analysis.
    Fan C; Chen F; Chen Y; Huang L; Wang M; Liu Y; Wang Y; Guo H; Zheng N; Liu Y; Wang H; Ma L
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38801700
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integrating gene set analysis and nonlinear predictive modeling of disease phenotypes using a Bayesian multitask formulation.
    Gönen M
    BMC Bioinformatics; 2016 Dec; 17(Suppl 16):0. PubMed ID: 28105911
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles.
    Klein MI; Stern DF; Zhao H
    BMC Bioinformatics; 2017 Jun; 18(1):317. PubMed ID: 28651562
    [TBL] [Abstract][Full Text] [Related]  

  • 12. classifieR a flexible interactive cloud-application for functional annotation of cancer transcriptomes.
    Quinn GP; Sessler T; Ahmaderaghi B; Lambe S; VanSteenhouse H; Lawler M; Wappett M; Seligmann B; Longley DB; McDade SS
    BMC Bioinformatics; 2022 Mar; 23(1):114. PubMed ID: 35361119
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detecting discordance enrichment among a series of two-sample genome-wide expression data sets.
    Lai Y; Zhang F; Nayak TK; Modarres R; Lee NH; McCaffrey TA
    BMC Genomics; 2017 Jan; 18(Suppl 1):1050. PubMed ID: 28198679
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A novel scoring method based on RNA-Seq immunograms describing individual cancer-immunity interactions.
    Kobayashi Y; Kushihara Y; Saito N; Yamaguchi S; Kakimi K
    Cancer Sci; 2020 Nov; 111(11):4031-4040. PubMed ID: 32810311
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GeneExpressionSignature: an R package for discovering functional connections using gene expression signatures.
    Li F; Cao Y; Han L; Cui X; Xie D; Wang S; Bo X
    OMICS; 2013 Feb; 17(2):116-8. PubMed ID: 23374109
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Signature-scoring methods developed for bulk samples are not adequate for cancer single-cell RNA sequencing data.
    Noureen N; Ye Z; Chen Y; Wang X; Zheng S
    Elife; 2022 Feb; 11():. PubMed ID: 35212622
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.
    Maruschke M; Reuter D; Koczan D; Hakenberg OW; Thiesen HJ
    BJU Int; 2011 Jul; 108(2 Pt 2):E29-35. PubMed ID: 21435154
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DBGSA: a novel method of distance-based gene set analysis.
    Li J; Wang L; Xu L; Zhang R; Huang M; Wang K; Xu J; Lv H; Shang Z; Zhang M; Jiang Y; Guo M; Li X
    J Hum Genet; 2012 Oct; 57(10):642-53. PubMed ID: 22786580
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genes and functions from breast cancer signatures.
    Huang S; Murphy L; Xu W
    BMC Cancer; 2018 Apr; 18(1):473. PubMed ID: 29699511
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GSVA: gene set variation analysis for microarray and RNA-seq data.
    Hänzelmann S; Castelo R; Guinney J
    BMC Bioinformatics; 2013 Jan; 14():7. PubMed ID: 23323831
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.