256 related articles for article (PubMed ID: 30413564)
1. RBP-Maps enables robust generation of splicing regulatory maps.
Yee BA; Pratt GA; Graveley BR; Van Nostrand EL; Yeo GW
RNA; 2019 Feb; 25(2):193-204. PubMed ID: 30413564
[TBL] [Abstract][Full Text] [Related]
2. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
[TBL] [Abstract][Full Text] [Related]
3. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand EL; Pratt GA; Yee BA; Wheeler EC; Blue SM; Mueller J; Park SS; Garcia KE; Gelboin-Burkhart C; Nguyen TB; Rabano I; Stanton R; Sundararaman B; Wang R; Fu XD; Graveley BR; Yeo GW
Genome Biol; 2020 Apr; 21(1):90. PubMed ID: 32252787
[TBL] [Abstract][Full Text] [Related]
4. Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.
Ye Z; Chen Z; Lan X; Hara S; Sunkel B; Huang TH; Elnitski L; Wang Q; Jin VX
Nucleic Acids Res; 2014 Mar; 42(5):2856-69. PubMed ID: 24369421
[TBL] [Abstract][Full Text] [Related]
5. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
6. CELF1 preferentially binds to exon-intron boundary and regulates alternative splicing in HeLa cells.
Xia H; Chen D; Wu Q; Wu G; Zhou Y; Zhang Y; Zhang L
Biochim Biophys Acta Gene Regul Mech; 2017 Sep; 1860(9):911-921. PubMed ID: 28733224
[TBL] [Abstract][Full Text] [Related]
7. Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.
Gulledge AA; Roberts AD; Vora H; Patel K; Loraine AE
Am J Bot; 2012 Feb; 99(2):219-31. PubMed ID: 22291167
[TBL] [Abstract][Full Text] [Related]
8. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
Sturgill D; Malone JH; Sun X; Smith HE; Rabinow L; Samson ML; Oliver B
BMC Bioinformatics; 2013 Nov; 14():320. PubMed ID: 24209455
[TBL] [Abstract][Full Text] [Related]
9. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
10. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.
Black DL
Cell; 2000 Oct; 103(3):367-70. PubMed ID: 11081623
[No Abstract] [Full Text] [Related]
11. Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates.
Gildea MA; Dwyer ZW; Pleiss JA
Methods; 2020 Apr; 176():34-45. PubMed ID: 31121301
[TBL] [Abstract][Full Text] [Related]
12. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
13. ASD: the Alternative Splicing Database.
Thanaraj TA; Stamm S; Clark F; Riethoven JJ; Le Texier V; Muilu J
Nucleic Acids Res; 2004 Jan; 32(Database issue):D64-9. PubMed ID: 14681360
[TBL] [Abstract][Full Text] [Related]
14. Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.
Leung SK; Jeffries AR; Castanho I; Jordan BT; Moore K; Davies JP; Dempster EL; Bray NJ; O'Neill P; Tseng E; Ahmed Z; Collier DA; Jeffery ED; Prabhakar S; Schalkwyk L; Jops C; Gandal MJ; Sheynkman GM; Hannon E; Mill J
Cell Rep; 2021 Nov; 37(7):110022. PubMed ID: 34788620
[TBL] [Abstract][Full Text] [Related]
15. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
Li Y; Rao X; Mattox WW; Amos CI; Liu B
PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
[TBL] [Abstract][Full Text] [Related]
16. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
[TBL] [Abstract][Full Text] [Related]
17. Discovery of Allele-Specific Protein-RNA Interactions in Human Transcriptomes.
Bahrami-Samani E; Xing Y
Am J Hum Genet; 2019 Mar; 104(3):492-502. PubMed ID: 30827501
[TBL] [Abstract][Full Text] [Related]
18. Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.
Zavolan M; Kondo S; Schonbach C; Adachi J; Hume DA; Hayashizaki Y; Gaasterland T; ;
Genome Res; 2003 Jun; 13(6B):1290-300. PubMed ID: 12819126
[TBL] [Abstract][Full Text] [Related]
19. Variation in alternative splicing across human tissues.
Yeo G; Holste D; Kreiman G; Burge CB
Genome Biol; 2004; 5(10):R74. PubMed ID: 15461793
[TBL] [Abstract][Full Text] [Related]
20. Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection.
Nguyen Quang N; Goudey S; Ségéral E; Mohammad A; Lemoine S; Blugeon C; Versapuech M; Paillart JC; Berlioz-Torrent C; Emiliani S; Gallois-Montbrun S
Retrovirology; 2020 Aug; 17(1):25. PubMed ID: 32807178
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
