218 related articles for article (PubMed ID: 30422979)
1. Bayesian phylodynamic inference with complex models.
Volz EM; Siveroni I
PLoS Comput Biol; 2018 Nov; 14(11):e1006546. PubMed ID: 30422979
[TBL] [Abstract][Full Text] [Related]
2. Phylodynamic Inference across Epidemic Scales.
Volz EM; Romero-Severson E; Leitner T
Mol Biol Evol; 2017 May; 34(5):1276-1288. PubMed ID: 28204593
[TBL] [Abstract][Full Text] [Related]
3. Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.
Popinga A; Vaughan T; Stadler T; Drummond AJ
Genetics; 2015 Feb; 199(2):595-607. PubMed ID: 25527289
[TBL] [Abstract][Full Text] [Related]
4. Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction.
Gill MS; Lemey P; Suchard MA; Rambaut A; Baele G
Mol Biol Evol; 2020 Jun; 37(6):1832-1842. PubMed ID: 32101295
[TBL] [Abstract][Full Text] [Related]
5. Phylodynamic Model Adequacy Using Posterior Predictive Simulations.
Duchene S; Bouckaert R; Duchene DA; Stadler T; Drummond AJ
Syst Biol; 2019 Mar; 68(2):358-364. PubMed ID: 29945220
[TBL] [Abstract][Full Text] [Related]
6. Getting to the root of epidemic spread with phylodynamic analysis of genomic data.
du Plessis L; Stadler T
Trends Microbiol; 2015 Jul; 23(7):383-6. PubMed ID: 26139467
[TBL] [Abstract][Full Text] [Related]
7. Phylodynamic inference for structured epidemiological models.
Rasmussen DA; Volz EM; Koelle K
PLoS Comput Biol; 2014 Apr; 10(4):e1003570. PubMed ID: 24743590
[TBL] [Abstract][Full Text] [Related]
8. Estimating Epidemic Incidence and Prevalence from Genomic Data.
Vaughan TG; Leventhal GE; Rasmussen DA; Drummond AJ; Welch D; Stadler T
Mol Biol Evol; 2019 Aug; 36(8):1804-1816. PubMed ID: 31058982
[TBL] [Abstract][Full Text] [Related]
9. Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study.
Ratmann O; Donker G; Meijer A; Fraser C; Koelle K
PLoS Comput Biol; 2012; 8(12):e1002835. PubMed ID: 23300420
[TBL] [Abstract][Full Text] [Related]
10. An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics.
Lan S; Palacios JA; Karcher M; Minin VN; Shahbaba B
Bioinformatics; 2015 Oct; 31(20):3282-9. PubMed ID: 26093147
[TBL] [Abstract][Full Text] [Related]
11. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
Shao Y; Magee AF; Vasylyeva TI; Suchard MA
PLoS Comput Biol; 2024 Mar; 20(3):e1011640. PubMed ID: 38551979
[TBL] [Abstract][Full Text] [Related]
12. Bayesian inference in an extended SEIR model with nonparametric disease transmission rate: an application to the Ebola epidemic in Sierra Leone.
Frasso G; Lambert P
Biostatistics; 2016 Oct; 17(4):779-92. PubMed ID: 27324411
[TBL] [Abstract][Full Text] [Related]
13. Model design for non-parametric phylodynamic inference and applications to pathogen surveillance.
Didelot X; Geidelberg L; ; Volz EM
bioRxiv; 2021 Aug; ():. PubMed ID: 34426812
[TBL] [Abstract][Full Text] [Related]
14. The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic.
Lam A; Duchene S
Viruses; 2021 Jan; 13(1):. PubMed ID: 33430050
[TBL] [Abstract][Full Text] [Related]
15. Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology.
Poon AF
Mol Biol Evol; 2015 Sep; 32(9):2483-95. PubMed ID: 26006189
[TBL] [Abstract][Full Text] [Related]
16. Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.
Gill MS; Lemey P; Bennett SN; Biek R; Suchard MA
Syst Biol; 2016 Nov; 65(6):1041-1056. PubMed ID: 27368344
[TBL] [Abstract][Full Text] [Related]
17. Inference for nonlinear epidemiological models using genealogies and time series.
Rasmussen DA; Ratmann O; Koelle K
PLoS Comput Biol; 2011 Aug; 7(8):e1002136. PubMed ID: 21901082
[TBL] [Abstract][Full Text] [Related]
18. Spatial and temporal dynamics of superspreading events in the 2014-2015 West Africa Ebola epidemic.
Lau MS; Dalziel BD; Funk S; McClelland A; Tiffany A; Riley S; Metcalf CJ; Grenfell BT
Proc Natl Acad Sci U S A; 2017 Feb; 114(9):2337-2342. PubMed ID: 28193880
[TBL] [Abstract][Full Text] [Related]
19. New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation.
De Maio N; Wu CH; O'Reilly KM; Wilson D
PLoS Genet; 2015 Aug; 11(8):e1005421. PubMed ID: 26267488
[TBL] [Abstract][Full Text] [Related]
20. Bayesian reconstruction of transmission within outbreaks using genomic variants.
De Maio N; Worby CJ; Wilson DJ; Stoesser N
PLoS Comput Biol; 2018 Apr; 14(4):e1006117. PubMed ID: 29668677
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
