215 related articles for article (PubMed ID: 30423070)
1. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
El-Kebir M
Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
[TBL] [Abstract][Full Text] [Related]
2. ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model.
Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
bioRxiv; 2023 Jan; ():. PubMed ID: 36711528
[TBL] [Abstract][Full Text] [Related]
3. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
[TBL] [Abstract][Full Text] [Related]
4. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
Satas G; Zaccaria S; Mon G; Raphael BJ
Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
[TBL] [Abstract][Full Text] [Related]
5. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G
Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010
[TBL] [Abstract][Full Text] [Related]
6. Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures.
El-Kebir M; Satas G; Oesper L; Raphael BJ
Cell Syst; 2016 Jul; 3(1):43-53. PubMed ID: 27467246
[TBL] [Abstract][Full Text] [Related]
7. Meltos: multi-sample tumor phylogeny reconstruction for structural variants.
Ricketts C; Seidman D; Popic V; Hormozdiari F; Batzoglou S; Hajirasouliha I
Bioinformatics; 2020 Feb; 36(4):1082-1090. PubMed ID: 31584621
[TBL] [Abstract][Full Text] [Related]
8. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data.
Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K
Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954
[TBL] [Abstract][Full Text] [Related]
9. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
Fu X; Lei H; Tao Y; Schwartz R
Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
[TBL] [Abstract][Full Text] [Related]
10. GRMT: Generative Reconstruction of Mutation Tree From Scratch Using Single-Cell Sequencing Data.
Yu Z; Liu H; Du F; Tang X
Front Genet; 2021; 12():692964. PubMed ID: 34149820
[TBL] [Abstract][Full Text] [Related]
11. PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
Sadeqi Azer E; Rashidi Mehrabadi F; Malikić S; Li XC; Bartok O; Litchfield K; Levy R; Samuels Y; Schäffer AA; Gertz EM; Day CP; Pérez-Guijarro E; Marie K; Lee MP; Merlino G; Ergun F; Sahinalp SC
Bioinformatics; 2020 Jul; 36(Suppl_1):i169-i176. PubMed ID: 32657358
[TBL] [Abstract][Full Text] [Related]
12. Summarizing the solution space in tumor phylogeny inference by multiple consensus trees.
Aguse N; Qi Y; El-Kebir M
Bioinformatics; 2019 Jul; 35(14):i408-i416. PubMed ID: 31510657
[TBL] [Abstract][Full Text] [Related]
13. Clonality inference in multiple tumor samples using phylogeny.
Malikic S; McPherson AW; Donmez N; Sahinalp CS
Bioinformatics; 2015 May; 31(9):1349-56. PubMed ID: 25568283
[TBL] [Abstract][Full Text] [Related]
14. PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data.
Malikic S; Mehrabadi FR; Ciccolella S; Rahman MK; Ricketts C; Haghshenas E; Seidman D; Hach F; Hajirasouliha I; Sahinalp SC
Genome Res; 2019 Nov; 29(11):1860-1877. PubMed ID: 31628256
[TBL] [Abstract][Full Text] [Related]
15. Copy number evolution with weighted aberrations in cancer.
Zeira R; Raphael BJ
Bioinformatics; 2020 Jul; 36(Suppl_1):i344-i352. PubMed ID: 32657354
[TBL] [Abstract][Full Text] [Related]
16. gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.
Ciccolella S; Soto Gomez M; Patterson MD; Della Vedova G; Hajirasouliha I; Bonizzoni P
BMC Bioinformatics; 2020 Dec; 21(Suppl 1):413. PubMed ID: 33297943
[TBL] [Abstract][Full Text] [Related]
17. Detecting evolutionary patterns of cancers using consensus trees.
Christensen S; Kim J; Chia N; Koyejo O; El-Kebir M
Bioinformatics; 2020 Dec; 36(Suppl_2):i684-i691. PubMed ID: 33381820
[TBL] [Abstract][Full Text] [Related]
18. Single-cell mutation calling and phylogenetic tree reconstruction with loss and recurrence.
Kuipers J; Singer J; Beerenwinkel N
Bioinformatics; 2022 Oct; 38(20):4713-4719. PubMed ID: 36000873
[TBL] [Abstract][Full Text] [Related]
19. RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.
Chen Z; Gong F; Wan L; Ma L
Bioinformatics; 2020 Jun; 36(11):3299-3306. PubMed ID: 32159762
[TBL] [Abstract][Full Text] [Related]
20. BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.
Toosi H; Moeini A; Hajirasouliha I
BMC Bioinformatics; 2019 Jun; 20(Suppl 11):282. PubMed ID: 31167637
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
