BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 30423088)

  • 1. Hierarchical HotNet: identifying hierarchies of altered subnetworks.
    Reyna MA; Leiserson MDM; Raphael BJ
    Bioinformatics; 2018 Sep; 34(17):i972-i980. PubMed ID: 30423088
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Network-Based Coverage of Mutational Profiles Reveals Cancer Genes.
    Hristov BH; Singh M
    Cell Syst; 2017 Sep; 5(3):221-229.e4. PubMed ID: 28957656
    [TBL] [Abstract][Full Text] [Related]  

  • 3. NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks.
    Chitra U; Park TY; Raphael BJ
    J Comput Biol; 2022 Dec; 29(12):1305-1323. PubMed ID: 36525308
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks.
    Hodzic E; Shrestha R; Zhu K; Cheng K; Collins CC; Cenk Sahinalp S
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30978274
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automatic context-specific subnetwork discovery from large interaction networks.
    Saha A; Tan AC; Kang J
    PLoS One; 2014; 9(1):e84227. PubMed ID: 24392115
    [TBL] [Abstract][Full Text] [Related]  

  • 6. nSEA: n-Node Subnetwork Enumeration Algorithm Identifies Lower Grade Glioma Subtypes with Altered Subnetworks and Distinct Prognostics.
    Zhang Z; Wang C; Zhao Z; Yi Z; Durmaz A; Yu JS; Bebek G
    Pac Symp Biocomput; 2024; 29():521-533. PubMed ID: 38160304
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Differentially mutated subnetworks discovery.
    Hajkarim MC; Upfal E; Vandin F
    Algorithms Mol Biol; 2019; 14():10. PubMed ID: 30976291
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prediction of cancer driver genes through network-based moment propagation of mutation scores.
    Gumpinger AC; Lage K; Horn H; Borgwardt K
    Bioinformatics; 2020 Jul; 36(Suppl_1):i508-i515. PubMed ID: 32657361
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DriverMP enables improved identification of cancer driver genes.
    Liu Y; Han J; Kong T; Xiao N; Mei Q; Liu J
    Gigascience; 2022 Dec; 12():. PubMed ID: 38091511
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A workflow to study mechanistic indicators for driver gene prediction with Moonlight.
    Nourbakhsh M; Saksager A; Tom N; Chen XS; Colaprico A; Olsen C; Tiberti M; Papaleo E
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37551622
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple Cancers.
    Durmaz A; Henderson TAD; Bebek G
    Pac Symp Biocomput; 2021; 26():261-272. PubMed ID: 33691023
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MaxCLK: discovery of cancer driver genes via maximal clique and information entropy of modules.
    Liu J; Ma F; Zhu Y; Zhang N; Kong L; Mi J; Cong H; Gao R; Wang M; Zhang Y
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38065693
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of co-evolving temporal networks.
    Elhesha R; Sarkar A; Boucher C; Kahveci T
    BMC Genomics; 2019 Jun; 20(Suppl 6):434. PubMed ID: 31189471
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.
    Bashashati A; Haffari G; Ding J; Ha G; Lui K; Rosner J; Huntsman DG; Caldas C; Aparicio SA; Shah SP
    Genome Biol; 2012 Dec; 13(12):R124. PubMed ID: 23383675
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Differential network enrichment analysis reveals novel lipid pathways in chronic kidney disease.
    Ma J; Karnovsky A; Afshinnia F; Wigginton J; Rader DJ; Natarajan L; Sharma K; Porter AC; Rahman M; He J; Hamm L; Shafi T; Gipson D; Gadegbeku C; Feldman H; Michailidis G; Pennathur S
    Bioinformatics; 2019 Sep; 35(18):3441-3452. PubMed ID: 30887029
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Regulation of regeneration in
    Islam MK; Mummadi ST; Liu S; Wei H
    aBIOTECH; 2023 Dec; 4(4):332-351. PubMed ID: 38106435
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Functional characterization of somatic mutations in cancer using network-based inference of protein activity.
    Alvarez MJ; Shen Y; Giorgi FM; Lachmann A; Ding BB; Ye BH; Califano A
    Nat Genet; 2016 Aug; 48(8):838-47. PubMed ID: 27322546
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PRODIGY: personalized prioritization of driver genes.
    Dinstag G; Shamir R
    Bioinformatics; 2020 Mar; 36(6):1831-1839. PubMed ID: 31681944
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A heuristic algorithm solving the mutual-exclusivity-sorting problem.
    Vinceti A; Trastulla L; Perron U; Raiconi A; Iorio F
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36669133
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identifying Significantly Perturbed Subnetworks in Cancer Using Multiple Protein-Protein Interaction Networks.
    Yang L; Chen R; Melendy T; Goodison S; Sun Y
    Cancers (Basel); 2023 Aug; 15(16):. PubMed ID: 37627118
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.