These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes. He W; Yang J; Jing Y; Xu L; Yu K; Fang X Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36883694 [TBL] [Abstract][Full Text] [Related]
6. SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand. Tang H; Bomhoff MD; Briones E; Zhang L; Schnable JC; Lyons E Genome Biol Evol; 2015 Nov; 7(12):3286-98. PubMed ID: 26560340 [TBL] [Abstract][Full Text] [Related]
7. ACES: Analysis of Conservation with an Extensive list of Species. Padhi EM; Ng JK; Mehinovic E; Sams EI; Turner TN Bioinformatics; 2021 Nov; 37(21):3920-3922. PubMed ID: 34601580 [TBL] [Abstract][Full Text] [Related]
8. SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes. Robert NSM; Sarigol F; Zieger E; Simakov O Bioinformatics; 2022 Dec; 38(24):5434-5436. PubMed ID: 36269177 [TBL] [Abstract][Full Text] [Related]
9. The JAX Synteny Browser for mouse-human comparative genomics. Kolishovski G; Lamoureux A; Hale P; Richardson JE; Recla JM; Adesanya O; Simons A; Kunde-Ramamoorthy G; Bult CJ Mamm Genome; 2019 Dec; 30(11-12):353-361. PubMed ID: 31776723 [TBL] [Abstract][Full Text] [Related]
10. Tcbf: a novel user-friendly tool for pan-3D genome analysis of topologically associating domain in eukaryotic organisms. He X; Huang X; Long Y; Liu Z; Chang X; Zhang X; Wang M Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37725346 [TBL] [Abstract][Full Text] [Related]
11. Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. Sinha AU; Meller J BMC Bioinformatics; 2007 Mar; 8():82. PubMed ID: 17343765 [TBL] [Abstract][Full Text] [Related]
12. Techniques for multi-genome synteny analysis to overcome assembly limitations. Bhutkar A; Russo S; Smith TF; Gelbart WM Genome Inform; 2006; 17(2):152-61. PubMed ID: 17503388 [TBL] [Abstract][Full Text] [Related]
13. Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level. Gehrmann T; Reinders MJ Bioinformatics; 2015 Nov; 31(21):3437-44. PubMed ID: 26116928 [TBL] [Abstract][Full Text] [Related]
14. A comparative study of pan-genome methods for microbial organisms: Urhan A; Abeel T Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34761737 [TBL] [Abstract][Full Text] [Related]
15. syntenet: an R/Bioconductor package for the inference and analysis of synteny networks. Almeida-Silva F; Zhao T; Ullrich KK; Schranz ME; Van de Peer Y Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36539202 [TBL] [Abstract][Full Text] [Related]
16. A method for achieving complete microbial genomes and improving bins from metagenomics data. Lui LM; Nielsen TN; Arkin AP PLoS Comput Biol; 2021 May; 17(5):e1008972. PubMed ID: 33961626 [TBL] [Abstract][Full Text] [Related]
17. Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates. Elghraoui A; Mirarab S; Swenson KM; Valafar F Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36637196 [TBL] [Abstract][Full Text] [Related]