These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 30423100)

  • 21. Improved pathway reconstruction from RNA interference screens by exploiting off-target effects.
    Srivatsa S; Kuipers J; Schmich F; Eicher S; Emmenlauer M; Dehio C; Beerenwinkel N
    Bioinformatics; 2018 Jul; 34(13):i519-i527. PubMed ID: 29950000
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data.
    Li Z; Wang Y; Ganan-Gomez I; Colla S; Do KA
    Bioinformatics; 2022 Oct; 38(21):4885-4892. PubMed ID: 36083008
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Inferring signalling dynamics by integrating interventional with observational data.
    Cardner M; Meyer-Schaller N; Christofori G; Beerenwinkel N
    Bioinformatics; 2019 Jul; 35(14):i577-i585. PubMed ID: 31510686
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Data generation and network reconstruction strategies for single cell transcriptomic profiles of CRISPR-mediated gene perturbations.
    Holding AN; Cook HV; Markowetz F
    Biochim Biophys Acta Gene Regul Mech; 2020 Jun; 1863(6):194441. PubMed ID: 31756390
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Single-cell RNA sequencing data analysis based on non-uniform ε-neighborhood network.
    Jia J; Chen L
    Bioinformatics; 2022 Apr; 38(9):2459-2465. PubMed ID: 35188181
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data.
    Mao W; Pouyan MB; Kostka D; Chikina M
    Bioinformatics; 2022 May; 38(10):2749-2756. PubMed ID: 35561207
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Diffusion maps for high-dimensional single-cell analysis of differentiation data.
    Haghverdi L; Buettner F; Theis FJ
    Bioinformatics; 2015 Sep; 31(18):2989-98. PubMed ID: 26002886
    [TBL] [Abstract][Full Text] [Related]  

  • 28. corto: a lightweight R package for gene network inference and master regulator analysis.
    Mercatelli D; Lopez-Garcia G; Giorgi FM
    Bioinformatics; 2020 Jun; 36(12):3916-3917. PubMed ID: 32232425
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Statistical significance of cluster membership for unsupervised evaluation of cell identities.
    Chung NC
    Bioinformatics; 2020 May; 36(10):3107-3114. PubMed ID: 32142108
    [TBL] [Abstract][Full Text] [Related]  

  • 30. FBA: feature barcoding analysis for single cell RNA-Seq.
    Duan J; Hon GC
    Bioinformatics; 2021 Nov; 37(22):4266-4268. PubMed ID: 33999185
    [TBL] [Abstract][Full Text] [Related]  

  • 31. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.
    Müller S; Cho A; Liu SJ; Lim DA; Diaz A
    Bioinformatics; 2018 Sep; 34(18):3217-3219. PubMed ID: 29897414
    [TBL] [Abstract][Full Text] [Related]  

  • 32. scNAME: neighborhood contrastive clustering with ancillary mask estimation for scRNA-seq data.
    Wan H; Chen L; Deng M
    Bioinformatics; 2022 Mar; 38(6):1575-1583. PubMed ID: 34999761
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models.
    Pirkl M; Hand E; Kube D; Spang R
    Bioinformatics; 2016 Mar; 32(6):893-900. PubMed ID: 26581413
    [TBL] [Abstract][Full Text] [Related]  

  • 34. scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering.
    Wang Y; Yu Z; Li S; Bian C; Liang Y; Wong KC; Li X
    Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36734596
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Identifying cancer pathway dysregulations using differential causal effects.
    Jablonski KP; Pirkl M; Ćevid D; Bühlmann P; Beerenwinkel N
    Bioinformatics; 2022 Mar; 38(6):1550-1559. PubMed ID: 34927666
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CrossTalkeR: analysis and visualization of ligand-receptorne tworks.
    Nagai JS; Leimkühler NB; Schaub MT; Schneider RK; Costa IG
    Bioinformatics; 2021 Nov; 37(22):4263-4265. PubMed ID: 35032393
    [TBL] [Abstract][Full Text] [Related]  

  • 37. scAWMV: an adaptively weighted multi-view learning framework for the integrative analysis of parallel scRNA-seq and scATAC-seq data.
    Zeng P; Ma Y; Lin Z
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36383176
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Robust classification of single-cell transcriptome data by nonnegative matrix factorization.
    Shao C; Höfer T
    Bioinformatics; 2017 Jan; 33(2):235-242. PubMed ID: 27663498
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MEMO: multi-experiment mixture model analysis of censored data.
    Geissen EM; Hasenauer J; Heinrich S; Hauf S; Theis FJ; Radde NE
    Bioinformatics; 2016 Aug; 32(16):2464-72. PubMed ID: 27153627
    [TBL] [Abstract][Full Text] [Related]  

  • 40. CStreet: a computed Cell State trajectory inference method for time-series single-cell RNA sequencing data.
    Zhao C; Xiu W; Hua Y; Zhang N; Zhang Y
    Bioinformatics; 2021 Nov; 37(21):3774-3780. PubMed ID: 34196686
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.