These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 30425841)

  • 1. Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence.
    Hilton SK; Bloom JD
    Virus Evol; 2018 Jul; 4(2):vey033. PubMed ID: 30425841
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Site-Specific Amino Acid Preferences Are Mostly Conserved in Two Closely Related Protein Homologs.
    Doud MB; Ashenberg O; Bloom JD
    Mol Biol Evol; 2015 Nov; 32(11):2944-60. PubMed ID: 26226986
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient inference, potential, and limitations of site-specific substitution models.
    Puller V; Sagulenko P; Neher RA
    Virus Evol; 2020 Jul; 6(2):veaa066. PubMed ID: 33343922
    [TBL] [Abstract][Full Text] [Related]  

  • 4. phydms: software for phylogenetic analyses informed by deep mutational scanning.
    Hilton SK; Doud MB; Bloom JD
    PeerJ; 2017; 5():e3657. PubMed ID: 28785526
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models.
    Bloom JD
    Biol Direct; 2017 Jan; 12(1):1. PubMed ID: 28095902
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An experimentally informed evolutionary model improves phylogenetic fit to divergent lactamase homologs.
    Bloom JD
    Mol Biol Evol; 2014 Oct; 31(10):2753-69. PubMed ID: 25063439
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Positive selection on the H3 hemagglutinin gene of human influenza virus A.
    Bush RM; Fitch WM; Bender CA; Cox NJ
    Mol Biol Evol; 1999 Nov; 16(11):1457-65. PubMed ID: 10555276
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC; Susko E; Roger AJ
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The genetic code can cause systematic bias in simple phylogenetic models.
    Whelan S
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):4003-11. PubMed ID: 18852102
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci.
    Zhu T; Dos Reis M; Yang Z
    Syst Biol; 2015 Mar; 64(2):267-80. PubMed ID: 25503979
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Origin and evolution of influenza virus hemagglutinin genes.
    Suzuki Y; Nei M
    Mol Biol Evol; 2002 Apr; 19(4):501-9. PubMed ID: 11919291
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mutational studies on resurrected ancestral proteins reveal conservation of site-specific amino acid preferences throughout evolutionary history.
    Risso VA; Manssour-Triedo F; Delgado-Delgado A; Arco R; Barroso-delJesus A; Ingles-Prieto A; Godoy-Ruiz R; Gavira JA; Gaucher EA; Ibarra-Molero B; Sanchez-Ruiz JM
    Mol Biol Evol; 2015 Feb; 32(2):440-55. PubMed ID: 25392342
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluating the relationship between evolutionary divergence and phylogenetic accuracy in AFLP data sets.
    García-Pereira MJ; Caballero A; Quesada H
    Mol Biol Evol; 2010 May; 27(5):988-1000. PubMed ID: 20026482
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The Effect of RNA Substitution Models on Viroid and RNA Virus Phylogenies.
    Patiño-Galindo JÁ; González-Candelas F; Pybus OG
    Genome Biol Evol; 2018 Feb; 10(2):657-666. PubMed ID: 29325030
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Maximum-Likelihood Phylogenetic Inference with Selection on Protein Folding Stability.
    Arenas M; Sánchez-Cobos A; Bastolla U
    Mol Biol Evol; 2015 Aug; 32(8):2195-207. PubMed ID: 25837579
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Amino Acids in Hemagglutinin Antigenic Site B Determine Antigenic and Receptor Binding Differences between A(H3N2)v and Ancestral Seasonal H3N2 Influenza Viruses.
    Wang X; Ilyushina NA; Lugovtsev VY; Bovin NV; Couzens LK; Gao J; Donnelly RP; Eichelberger MC; Wan H
    J Virol; 2017 Jan; 91(2):. PubMed ID: 27807224
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evolution of the H3 influenza virus hemagglutinin from human and nonhuman hosts.
    Bean WJ; Schell M; Katz J; Kawaoka Y; Naeve C; Gorman O; Webster RG
    J Virol; 1992 Feb; 66(2):1129-38. PubMed ID: 1731092
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Molecular evolution of hemagglutinin genes of H1N1 swine and human influenza A viruses.
    Sugita S; Yoshioka Y; Itamura S; Kanegae Y; Oguchi K; Gojobori T; Nerome K; Oya A
    J Mol Evol; 1991 Jan; 32(1):16-23. PubMed ID: 1901364
    [TBL] [Abstract][Full Text] [Related]  

  • 19. [Analysis of genetic variation of hemagglutinin and three internal genes of influenza B virus isolated in Zhejiang province from 1999 to 2012].
    Mao HY; Sun Y; Zhang YJ; Zhou M; Chen Y; Li Z; Lu YY
    Zhonghua Yu Fang Yi Xue Za Zhi; 2013 May; 47(5):408-14. PubMed ID: 23958122
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A method for detecting positive selection at single amino acid sites.
    Suzuki Y; Gojobori T
    Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.