252 related articles for article (PubMed ID: 30451840)
1. A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping.
Deschamps S; Zhang Y; Llaca V; Ye L; Sanyal A; King M; May G; Lin H
Nat Commun; 2018 Nov; 9(1):4844. PubMed ID: 30451840
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
3. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
[TBL] [Abstract][Full Text] [Related]
4. SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica).
Formenti G; Chiara M; Poveda L; Francoijs KJ; Bonisoli-Alquati A; Canova L; Gianfranceschi L; Horner DS; Saino N
Gigascience; 2019 Jan; 8(1):. PubMed ID: 30496513
[TBL] [Abstract][Full Text] [Related]
5. Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements.
Gui S; Peng J; Wang X; Wu Z; Cao R; Salse J; Zhang H; Zhu Z; Xia Q; Quan Z; Shu L; Ke W; Ding Y
Plant J; 2018 May; 94(4):721-734. PubMed ID: 29575237
[TBL] [Abstract][Full Text] [Related]
6. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
[TBL] [Abstract][Full Text] [Related]
7. Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations.
Karamitros T; van Wilgenburg B; Wills M; Klenerman P; Magiorkinis G
BMC Genomics; 2018 Aug; 19(1):577. PubMed ID: 30068288
[TBL] [Abstract][Full Text] [Related]
8. Oxford Nanopore MinION Sequencing and Genome Assembly.
Lu H; Giordano F; Ning Z
Genomics Proteomics Bioinformatics; 2016 Oct; 14(5):265-279. PubMed ID: 27646134
[TBL] [Abstract][Full Text] [Related]
9. Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing.
Scheunert A; Dorfner M; Lingl T; Oberprieler C
PLoS One; 2020; 15(3):e0226234. PubMed ID: 32208422
[TBL] [Abstract][Full Text] [Related]
10. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps.
Belser C; Istace B; Denis E; Dubarry M; Baurens FC; Falentin C; Genete M; Berrabah W; Chèvre AM; Delourme R; Deniot G; Denoeud F; Duffé P; Engelen S; Lemainque A; Manzanares-Dauleux M; Martin G; Morice J; Noel B; Vekemans X; D'Hont A; Rousseau-Gueutin M; Barbe V; Cruaud C; Wincker P; Aury JM
Nat Plants; 2018 Nov; 4(11):879-887. PubMed ID: 30390080
[TBL] [Abstract][Full Text] [Related]
11. MinION-based long-read sequencing and assembly extends the
Tyson JR; O'Neil NJ; Jain M; Olsen HE; Hieter P; Snutch TP
Genome Res; 2018 Feb; 28(2):266-274. PubMed ID: 29273626
[TBL] [Abstract][Full Text] [Related]
12. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell.
Michael TP; Jupe F; Bemm F; Motley ST; Sandoval JP; Lanz C; Loudet O; Weigel D; Ecker JR
Nat Commun; 2018 Feb; 9(1):541. PubMed ID: 29416032
[TBL] [Abstract][Full Text] [Related]
13. Nanopore sequencing and assembly of a human genome with ultra-long reads.
Jain M; Koren S; Miga KH; Quick J; Rand AC; Sasani TA; Tyson JR; Beggs AD; Dilthey AT; Fiddes IT; Malla S; Marriott H; Nieto T; O'Grady J; Olsen HE; Pedersen BS; Rhie A; Richardson H; Quinlan AR; Snutch TP; Tee L; Paten B; Phillippy AM; Simpson JT; Loman NJ; Loose M
Nat Biotechnol; 2018 Apr; 36(4):338-345. PubMed ID: 29431738
[TBL] [Abstract][Full Text] [Related]
14. High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.
Kranz A; Vogel A; Degner U; Kiefler I; Bott M; Usadel B; Polen T
J Biotechnol; 2017 Sep; 258():197-205. PubMed ID: 28433722
[TBL] [Abstract][Full Text] [Related]
15. Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.
Edger PP; VanBuren R; Colle M; Poorten TJ; Wai CM; Niederhuth CE; Alger EI; Ou S; Acharya CB; Wang J; Callow P; McKain MR; Shi J; Collier C; Xiong Z; Mower JP; Slovin JP; Hytönen T; Jiang N; Childs KL; Knapp SJ
Gigascience; 2018 Feb; 7(2):1-7. PubMed ID: 29253147
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
17. Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore Technology.
Lee YG; Choi SC; Kang Y; Kim KM; Kang CS; Kim C
Plants (Basel); 2019 Aug; 8(8):. PubMed ID: 31390788
[TBL] [Abstract][Full Text] [Related]
18. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
19. A high-quality de novo genome assembly based on nanopore sequencing of a wild-caught coconut rhinoceros beetle (Oryctes rhinoceros).
Filipović I; Rašić G; Hereward J; Gharuka M; Devine GJ; Furlong MJ; Etebari K
BMC Genomics; 2022 Jun; 23(1):426. PubMed ID: 35672676
[TBL] [Abstract][Full Text] [Related]
20. Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing.
Bliznina A; Masunaga A; Mansfield MJ; Tan Y; Liu AW; West C; Rustagi T; Chien HC; Kumar S; Pichon J; Plessy C; Luscombe NM
BMC Genomics; 2021 Mar; 22(1):222. PubMed ID: 33781200
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
