These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

163 related articles for article (PubMed ID: 3047396)

  • 1. Evaluation of catalytic free energies in genetically modified proteins.
    Warshel A; Sussman F; Hwang JK
    J Mol Biol; 1988 May; 201(1):139-59. PubMed ID: 3047396
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Semiquantitative calculations of catalytic free energies in genetically modified enzymes.
    Hwang JK; Warshel A
    Biochemistry; 1987 May; 26(10):2669-73. PubMed ID: 3300766
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease.
    Sham YY; Chu ZT; Tao H; Warshel A
    Proteins; 2000 Jun; 39(4):393-407. PubMed ID: 10813821
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Remarkable rate enhancement of orotidine 5'-monophosphate decarboxylase is due to transition-state stabilization rather than to ground-state destabilization.
    Warshel A; Strajbl M; Villà J; Florián J
    Biochemistry; 2000 Dec; 39(48):14728-38. PubMed ID: 11101287
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The catalytic effect of dihydrofolate reductase and its mutants is determined by reorganization energies.
    Liu H; Warshel A
    Biochemistry; 2007 May; 46(20):6011-25. PubMed ID: 17469852
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Free energy perturbation calculations on binding and catalysis after mutating Asn 155 in subtilisin.
    Rao SN; Singh UC; Bash PA; Kollman PA
    Nature; 1987 Aug 6-12; 328(6130):551-4. PubMed ID: 3302725
    [TBL] [Abstract][Full Text] [Related]  

  • 7. How much do enzymes really gain by restraining their reacting fragments?
    Shurki A; Strajbl M; Villà J; Warshel A
    J Am Chem Soc; 2002 Apr; 124(15):4097-107. PubMed ID: 11942849
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Theoretical perspectives on the reaction mechanism of serine proteases: the reaction free energy profiles of the acylation process.
    Ishida T; Kato S
    J Am Chem Soc; 2003 Oct; 125(39):12035-48. PubMed ID: 14505425
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Simulations of the large kinetic isotope effect and the temperature dependence of the hydrogen atom transfer in lipoxygenase.
    Olsson MH; Siegbahn PE; Warshel A
    J Am Chem Soc; 2004 Mar; 126(9):2820-8. PubMed ID: 14995199
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The barrier for proton transport in aquaporins as a challenge for electrostatic models: the role of protein relaxation in mutational calculations.
    Kato M; Pisliakov AV; Warshel A
    Proteins; 2006 Sep; 64(4):829-44. PubMed ID: 16779836
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Enzymes work by solvation substitution rather than by desolvation.
    Warshel A; Aqvist J; Creighton S
    Proc Natl Acad Sci U S A; 1989 Aug; 86(15):5820-4. PubMed ID: 2762299
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Electrostatic contributions to protein-protein binding affinities: application to Rap/Raf interaction.
    Muegge I; Schweins T; Warshel A
    Proteins; 1998 Mar; 30(4):407-23. PubMed ID: 9533625
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Apparent NAC effect in chorismate mutase reflects electrostatic transition state stabilization.
    Strajbl M; Shurki A; Kato M; Warshel A
    J Am Chem Soc; 2003 Aug; 125(34):10228-37. PubMed ID: 12926945
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Probing the importance of hydrogen bonds in the active site of the subtilisin nattokinase by site-directed mutagenesis and molecular dynamics simulation.
    Zheng ZL; Ye MQ; Zuo ZY; Liu ZG; Tai KC; Zou GL
    Biochem J; 2006 May; 395(3):509-15. PubMed ID: 16411898
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase.
    Archontis G; Simonson T; Karplus M
    J Mol Biol; 2001 Feb; 306(2):307-27. PubMed ID: 11237602
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Misunderstanding the preorganization concept can lead to confusions about the origin of enzyme catalysis.
    Jindal G; Warshel A
    Proteins; 2017 Dec; 85(12):2157-2161. PubMed ID: 28905418
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effects of point mutation on enzymatic activity: correlation between protein electronic structure and motion in chorismate mutase reaction.
    Ishida T
    J Am Chem Soc; 2010 May; 132(20):7104-18. PubMed ID: 20426479
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Calculations of free energy profiles for the staphylococcal nuclease catalyzed reaction.
    Aqvist J; Warshel A
    Biochemistry; 1989 May; 28(11):4680-9. PubMed ID: 2765507
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Calculations of electrostatic energies in proteins. The energetics of ionized groups in bovine pancreatic trypsin inhibitor.
    Russell ST; Warshel A
    J Mol Biol; 1985 Sep; 185(2):389-404. PubMed ID: 2414450
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Computer simulations of enzyme catalysis: methods, progress, and insights.
    Warshel A
    Annu Rev Biophys Biomol Struct; 2003; 32():425-43. PubMed ID: 12574064
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.