192 related articles for article (PubMed ID: 30485688)
1. The evolution of RNA structural probing methods: From gels to next-generation sequencing.
Mailler E; Paillart JC; Marquet R; Smyth RP; Vivet-Boudou V
Wiley Interdiscip Rev RNA; 2019 Mar; 10(2):e1518. PubMed ID: 30485688
[TBL] [Abstract][Full Text] [Related]
2. Genome-Wide Approaches for RNA Structure Probing.
Silverman IM; Berkowitz ND; Gosai SJ; Gregory BD
Adv Exp Med Biol; 2016; 907():29-59. PubMed ID: 27256381
[TBL] [Abstract][Full Text] [Related]
3. Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond.
Gilmer O; Quignon E; Jousset AC; Paillart JC; Marquet R; Vivet-Boudou V
Viruses; 2021 Sep; 13(10):. PubMed ID: 34696322
[TBL] [Abstract][Full Text] [Related]
4. Computational analysis of RNA structures with chemical probing data.
Ge P; Zhang S
Methods; 2015 Jun; 79-80():60-6. PubMed ID: 25687190
[TBL] [Abstract][Full Text] [Related]
5. Probing RNA structure and dynamics using nanopore and next generation sequencing.
Bose E; Xiong S; Jones AN
J Biol Chem; 2024 Jun; 300(6):107317. PubMed ID: 38677514
[TBL] [Abstract][Full Text] [Related]
6. Dawn of the in vivo RNA structurome and interactome.
Kwok CK
Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722
[TBL] [Abstract][Full Text] [Related]
7. RNA Framework for Assaying the Structure of RNAs by High-Throughput Sequencing.
Marinus T; Incarnato D
Methods Mol Biol; 2021; 2284():63-76. PubMed ID: 33835438
[TBL] [Abstract][Full Text] [Related]
8. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing.
Wan Y; Qu K; Ouyang Z; Chang HY
Methods Mol Biol; 2016; 1361():141-60. PubMed ID: 26483021
[TBL] [Abstract][Full Text] [Related]
9. RNA structure: merging chemistry and genomics for a holistic perspective.
Kubota M; Chan D; Spitale RC
Bioessays; 2015 Oct; 37(10):1129-38. PubMed ID: 26288173
[TBL] [Abstract][Full Text] [Related]
10. Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS.
Chorostecki U; Willis JR; Saus E; Gabaldon T
Methods Mol Biol; 2021; 2284():51-62. PubMed ID: 33835437
[TBL] [Abstract][Full Text] [Related]
11. nextPARS: parallel probing of RNA structures in Illumina.
Saus E; Willis JR; Pryszcz LP; Hafez A; Llorens C; Himmelbauer H; Gabaldón T
RNA; 2018 Apr; 24(4):609-619. PubMed ID: 29358234
[TBL] [Abstract][Full Text] [Related]
12. Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol.
Seetin MG; Kladwang W; Bida JP; Das R
Methods Mol Biol; 2014; 1086():95-117. PubMed ID: 24136600
[TBL] [Abstract][Full Text] [Related]
13. Measuring RNA structure transcriptome-wide with icSHAPE.
Chan D; Feng C; Spitale RC
Methods; 2017 May; 120():85-90. PubMed ID: 28336307
[TBL] [Abstract][Full Text] [Related]
14. New windows into retroviral RNA structures.
Jayaraman D; Kenyon JC
Retrovirology; 2018 Jan; 15(1):11. PubMed ID: 29368653
[TBL] [Abstract][Full Text] [Related]
15. StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.
Tack DC; Tang Y; Ritchey LE; Assmann SM; Bevilacqua PC
Methods; 2018 Jul; 143():12-15. PubMed ID: 29410279
[TBL] [Abstract][Full Text] [Related]
16. StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
Tang Y; Bouvier E; Kwok CK; Ding Y; Nekrutenko A; Bevilacqua PC; Assmann SM
Bioinformatics; 2015 Aug; 31(16):2668-75. PubMed ID: 25886980
[TBL] [Abstract][Full Text] [Related]
17. Long-read single-molecule RNA structure sequencing using nanopore.
Bizuayehu TT; Labun K; Jakubec M; Jefimov K; Niazi AM; Valen E
Nucleic Acids Res; 2022 Nov; 50(20):e120. PubMed ID: 36166000
[TBL] [Abstract][Full Text] [Related]
18. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
Watters KE; Lucks JB
Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
[TBL] [Abstract][Full Text] [Related]
19. SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.
Loughrey D; Watters KE; Settle AH; Lucks JB
Nucleic Acids Res; 2014 Dec; 42(21):e165. PubMed ID: 25303992
[TBL] [Abstract][Full Text] [Related]
20. SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data.
Poulsen LD; Kielpinski LJ; Salama SR; Krogh A; Vinther J
RNA; 2015 May; 21(5):1042-52. PubMed ID: 25805860
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]