214 related articles for article (PubMed ID: 30497368)
1. Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification.
Elez K; Bonvin AMJJ; Vangone A
BMC Bioinformatics; 2018 Nov; 19(Suppl 15):438. PubMed ID: 30497368
[TBL] [Abstract][Full Text] [Related]
2. A PDB-wide, evolution-based assessment of protein-protein interfaces.
Baskaran K; Duarte JM; Biyani N; Bliven S; Capitani G
BMC Struct Biol; 2014 Oct; 14():22. PubMed ID: 25326082
[TBL] [Abstract][Full Text] [Related]
3. PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.
Jiménez-García B; Elez K; Koukos PI; Bonvin AM; Vangone A
Bioinformatics; 2019 Nov; 35(22):4821-4823. PubMed ID: 31141126
[TBL] [Abstract][Full Text] [Related]
4. Automated evaluation of quaternary structures from protein crystals.
Bliven S; Lafita A; Parker A; Capitani G; Duarte JM
PLoS Comput Biol; 2018 Apr; 14(4):e1006104. PubMed ID: 29708963
[TBL] [Abstract][Full Text] [Related]
5. Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts.
Liu Q; Li Z; Li J
BMC Bioinformatics; 2014; 15 Suppl 16(Suppl 16):S3. PubMed ID: 25522196
[TBL] [Abstract][Full Text] [Related]
6. CRK: an evolutionary approach for distinguishing biologically relevant interfaces from crystal contacts.
Schärer MA; Grütter MG; Capitani G
Proteins; 2010 Sep; 78(12):2707-13. PubMed ID: 20589644
[TBL] [Abstract][Full Text] [Related]
7. Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts.
Capitani G; Duarte JM; Baskaran K; Bliven S; Somody JC
Bioinformatics; 2016 Feb; 32(4):481-9. PubMed ID: 26508758
[TBL] [Abstract][Full Text] [Related]
8. Integrating co-evolutionary signals and other properties of residue pairs to distinguish biological interfaces from crystal contacts.
Hu J; Liu HF; Sun J; Wang J; Liu R
Protein Sci; 2018 Sep; 27(9):1723-1735. PubMed ID: 29931702
[TBL] [Abstract][Full Text] [Related]
9. Protein interface classification by evolutionary analysis.
Duarte JM; Srebniak A; Schärer MA; Capitani G
BMC Bioinformatics; 2012 Dec; 13():334. PubMed ID: 23259833
[TBL] [Abstract][Full Text] [Related]
10. Effective discrimination between biologically relevant contacts and crystal packing contacts using new determinants.
Luo J; Guo Y; Fu Y; Wang Y; Li W; Li M
Proteins; 2014 Nov; 82(11):3090-100. PubMed ID: 25142782
[TBL] [Abstract][Full Text] [Related]
11. Protein-protein interfaces are vdW dominant with selective H-bonds and (or) electrostatics towards broad functional specificity.
Nilofer C; Sukhwal A; Mohanapriya A; Kangueane P
Bioinformation; 2017; 13(6):164-173. PubMed ID: 28729757
[TBL] [Abstract][Full Text] [Related]
12. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
13. Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
Bordner AJ; Gorin AA
BMC Bioinformatics; 2008 May; 9():234. PubMed ID: 18474114
[TBL] [Abstract][Full Text] [Related]
14. A structural dissection of large protein-protein crystal packing contacts.
Luo J; Liu Z; Guo Y; Li M
Sci Rep; 2015 Sep; 5():14214. PubMed ID: 26370141
[TBL] [Abstract][Full Text] [Related]
15. IChemPIC: A Random Forest Classifier of Biological and Crystallographic Protein-Protein Interfaces.
Da Silva F; Desaphy J; Bret G; Rognan D
J Chem Inf Model; 2015 Sep; 55(9):2005-14. PubMed ID: 26344157
[TBL] [Abstract][Full Text] [Related]
16. Statistical analysis of interface similarity in crystals of homologous proteins.
Xu Q; Canutescu AA; Wang G; Shapovalov M; Obradovic Z; Dunbrack RL
J Mol Biol; 2008 Aug; 381(2):487-507. PubMed ID: 18599072
[TBL] [Abstract][Full Text] [Related]
17. Beta atomic contacts: identifying critical specific contacts in protein binding interfaces.
Liu Q; Kwoh CK; Hoi SC
PLoS One; 2013; 8(4):e59737. PubMed ID: 23630569
[TBL] [Abstract][Full Text] [Related]
18. Computational structural analysis: multiple proteins bound to DNA.
Tomovic A; Oakeley EJ
PLoS One; 2008 Sep; 3(9):e3243. PubMed ID: 18802470
[TBL] [Abstract][Full Text] [Related]
19. NOXclass: prediction of protein-protein interaction types.
Zhu H; Domingues FS; Sommer I; Lengauer T
BMC Bioinformatics; 2006 Jan; 7():27. PubMed ID: 16423290
[TBL] [Abstract][Full Text] [Related]
20. Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.
De S; Krishnadev O; Srinivasan N; Rekha N
BMC Struct Biol; 2005 Aug; 5():15. PubMed ID: 16105176
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
