These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 30522439)

  • 1. Cluster oligonucleotide signatures for rapid identification by sequencing.
    Zahariev M; Chen W; Visagie CM; Lévesque CA
    BMC Bioinformatics; 2018 Oct; 19(1):395. PubMed ID: 30522439
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets.
    Bader KC; Grothoff C; Meier H
    Bioinformatics; 2011 Jun; 27(11):1546-54. PubMed ID: 21471017
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Resolving prokaryotic taxonomy without rRNA: longer oligonucleotide word lengths improve genome and metagenome taxonomic classification.
    Alsop EB; Raymond J
    PLoS One; 2013; 8(7):e67337. PubMed ID: 23840870
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
    Liu X; Yu Y; Liu J; Elliott CF; Qian C; Liu J
    Bioinformatics; 2018 Jan; 34(1):171-178. PubMed ID: 29036588
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations.
    Lee AY; Lee CS; Van Gelder RN
    BMC Bioinformatics; 2016 Jul; 17():292. PubMed ID: 27465705
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Multiplex sequencing of pooled mitochondrial genomes-a crucial step toward biodiversity analysis using mito-metagenomics.
    Tang M; Tan M; Meng G; Yang S; Su X; Liu S; Song W; Li Y; Wu Q; Zhang A; Zhou X
    Nucleic Acids Res; 2014 Dec; 42(22):e166. PubMed ID: 25294837
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Amplicon Sequencing of Single-Copy Protein-Coding Genes Reveals Accurate Diversity for Sequence-Discrete Microbiome Populations.
    Yang C; Su Q; Tang M; Luo S; Zheng H; Zhang X; Zhou X
    Microbiol Spectr; 2022 Apr; 10(2):e0210521. PubMed ID: 35416715
    [TBL] [Abstract][Full Text] [Related]  

  • 8. metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data.
    Louvel G; Der Sarkissian C; Hanghøj K; Orlando L
    Mol Ecol Resour; 2016 Nov; 16(6):1415-1427. PubMed ID: 27238636
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets.
    Scheuch M; Höper D; Beer M
    BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices.
    Sanderson ND; Street TL; Foster D; Swann J; Atkins BL; Brent AJ; McNally MA; Oakley S; Taylor A; Peto TEA; Crook DW; Eyre DW
    BMC Genomics; 2018 Sep; 19(1):714. PubMed ID: 30261842
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
    Brumfield KD; Huq A; Colwell RR; Olds JL; Leddy MB
    PLoS One; 2020; 15(2):e0228899. PubMed ID: 32053657
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.
    Zhang Y; Sun Y; Cole JR
    PLoS Comput Biol; 2014 Aug; 10(8):e1003737. PubMed ID: 25122209
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).
    Deshpande SV; Reed TM; Sullivan RF; Kerkhof LJ; Beigel KM; Wade MM
    Genes (Basel); 2019 Jul; 10(8):. PubMed ID: 31366182
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SRIdent: A novel pipeline for real-time identification of species from high-throughput sequencing reads in Metagenomics and clinical diagnostic assays.
    Karimi R; Hajdu A
    Annu Int Conf IEEE Eng Med Biol Soc; 2015; 2015():6481-4. PubMed ID: 26737777
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
    Jo J; Oh J; Park C
    J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.
    Loit K; Adamson K; Bahram M; Puusepp R; Anslan S; Kiiker R; Drenkhan R; Tedersoo L
    Appl Environ Microbiol; 2019 Nov; 85(21):. PubMed ID: 31444199
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
    Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
    BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
    Girotto S; Pizzi C; Comin M
    Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Diazotroph Community Characterization via a High-Throughput
    Gaby JC; Rishishwar L; Valderrama-Aguirre LC; Green SJ; Valderrama-Aguirre A; Jordan IK; Kostka JE
    Appl Environ Microbiol; 2018 Feb; 84(4):. PubMed ID: 29180374
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.