148 related articles for article (PubMed ID: 30523036)
1. Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics.
Danko DC; Meleshko D; Bezdan D; Mason C; Hajirasouliha I
Genome Res; 2019 Jan; 29(1):116-124. PubMed ID: 30523036
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
3. Short clones or long clones? A simulation study on the use of paired reads in metagenomics.
Mitra S; Schubach M; Huson DH
BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20122183
[TBL] [Abstract][Full Text] [Related]
4. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.
Yang C; Zhang Z; Huang Y; Xie X; Liao H; Xiao J; Veldsman WP; Yin K; Fang X; Zhang L
Gigascience; 2024 Jan; 13():. PubMed ID: 38869148
[TBL] [Abstract][Full Text] [Related]
5. Sketching and sampling approaches for fast and accurate long read classification.
Das A; Schatz MC
BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
[TBL] [Abstract][Full Text] [Related]
6. Exploring high-quality microbial genomes by assembling short-reads with long-range connectivity.
Zhang Z; Xiao J; Wang H; Yang C; Huang Y; Yue Z; Chen Y; Han L; Yin K; Lyu A; Fang X; Zhang L
Nat Commun; 2024 May; 15(1):4631. PubMed ID: 38821971
[TBL] [Abstract][Full Text] [Related]
7. IterCluster: a barcode clustering algorithm for long fragment read analysis.
Weng J; Chen T; Xie Y; Xu X; Zhang G; Peters BA; Drmanac R
PeerJ; 2020; 8():e8431. PubMed ID: 32231869
[TBL] [Abstract][Full Text] [Related]
8. Mora: abundance aware metagenomic read re-assignment for disentangling similar strains.
Zheng A; Shaw J; Yu YW
BMC Bioinformatics; 2024 Apr; 25(1):161. PubMed ID: 38649836
[TBL] [Abstract][Full Text] [Related]
9. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
10. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
[TBL] [Abstract][Full Text] [Related]
11. Generation and application of pseudo-long reads for metagenome assembly.
Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
Gigascience; 2022 May; 11():. PubMed ID: 35579554
[TBL] [Abstract][Full Text] [Related]
12. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
13. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
[TBL] [Abstract][Full Text] [Related]
14. Large-scale metagenomic sequence clustering on map-reduce clusters.
Yang X; Zola J; Aluru S
J Bioinform Comput Biol; 2013 Feb; 11(1):1340001. PubMed ID: 23427983
[TBL] [Abstract][Full Text] [Related]
15. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
16. OGRE: Overlap Graph-based metagenomic Read clustEring.
Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
[TBL] [Abstract][Full Text] [Related]
17.
Faure R; Lavenier D
Bioinform Adv; 2022; 2(1):vbac068. PubMed ID: 36699389
[TBL] [Abstract][Full Text] [Related]
18. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
Portik DM; Brown CT; Pierce-Ward NT
BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
[TBL] [Abstract][Full Text] [Related]
19. Ariadne: synthetic long read deconvolution using assembly graphs.
Mak L; Meleshko D; Danko DC; Barakzai WN; Maharjan S; Belchikov N; Hajirasouliha I
Genome Biol; 2023 Aug; 24(1):197. PubMed ID: 37641111
[TBL] [Abstract][Full Text] [Related]
20. MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.
Gori F; Folino G; Jetten MS; Marchiori E
Bioinformatics; 2011 Jan; 27(2):196-203. PubMed ID: 21127032
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]