These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
26. SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes. Robert NSM; Sarigol F; Zieger E; Simakov O Bioinformatics; 2022 Dec; 38(24):5434-5436. PubMed ID: 36269177 [TBL] [Abstract][Full Text] [Related]
27. Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons. Wang QF; Prabhakar S; Chanan S; Cheng JF; Rubin EM; Boffelli D Genome Biol; 2007; 8(1):R1. PubMed ID: 17201929 [TBL] [Abstract][Full Text] [Related]
28. Cis-regulation and conserved non-coding elements in amphioxus. Beaster-Jones L Brief Funct Genomics; 2012 Mar; 11(2):118-30. PubMed ID: 22402505 [TBL] [Abstract][Full Text] [Related]
29. C-InterSecture-a computational tool for interspecies comparison of genome architecture. Nuriddinov M; Fishman V Bioinformatics; 2019 Dec; 35(23):4912-4921. PubMed ID: 31116383 [TBL] [Abstract][Full Text] [Related]
30. Developmental regulation of conserved non-coding element evolution provides insights into limb loss in squamates. Wang Z; Peng C; Wu W; Yan C; Lv Y; Li JT Sci China Life Sci; 2023 Oct; 66(10):2399-2414. PubMed ID: 37256419 [TBL] [Abstract][Full Text] [Related]
31. Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information. Meireles-Filho AC; Stark A Curr Opin Genet Dev; 2009 Dec; 19(6):565-70. PubMed ID: 19913403 [TBL] [Abstract][Full Text] [Related]
32. Functional Similarities of Protein-Coding Genes in Topologically Associating Domains and Spatially-Proximate Genomic Regions. Zhao C; Liu T; Wang Z Genes (Basel); 2022 Mar; 13(3):. PubMed ID: 35328034 [TBL] [Abstract][Full Text] [Related]
33. Topologically associating domains are disrupted by evolutionary genome rearrangements forming species-specific enhancer connections in mice and humans. Gilbertson SE; Walter HC; Gardner K; Wren SN; Vahedi G; Weinmann AS Cell Rep; 2022 May; 39(5):110769. PubMed ID: 35508135 [TBL] [Abstract][Full Text] [Related]
35. Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes. Li X; Chen F; Chen Y Bioinformatics; 2020 Jun; 36(12):3871-3873. PubMed ID: 32221617 [TBL] [Abstract][Full Text] [Related]
36. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX; Kozmikova I; Ono H; Nossa CW; Kozmik Z; Putnam NH; Yu JK; Holland LZ Genome Biol Evol; 2016 Aug; 8(8):2387-405. PubMed ID: 27412606 [TBL] [Abstract][Full Text] [Related]
37. Phylonium: fast estimation of evolutionary distances from large samples of similar genomes. Klötzl F; Haubold B Bioinformatics; 2020 Apr; 36(7):2040-2046. PubMed ID: 31790149 [TBL] [Abstract][Full Text] [Related]
38. A unified ILP framework for core ancestral genome reconstruction problems. Avdeyev P; Alexeev N; Rong Y; Alekseyev MA Bioinformatics; 2020 May; 36(10):2993-3003. PubMed ID: 32058559 [TBL] [Abstract][Full Text] [Related]
39. An evolutionary perspective of regulatory landscape dynamics in development and disease. Franke M; Gómez-Skarmeta JL Curr Opin Cell Biol; 2018 Dec; 55():24-29. PubMed ID: 30006052 [TBL] [Abstract][Full Text] [Related]
40. A Review of Methods to Quantify the Genomic Similarity of Topological Associating Domains. Li Y; Wu A; Liu G; Liu L J Comput Biol; 2019 Nov; 26(11):1326-1338. PubMed ID: 31260328 [No Abstract] [Full Text] [Related] [Previous] [Next] [New Search]