336 related articles for article (PubMed ID: 30535155)
1. In Silico and Experimental Evaluation of Primer Sets for Species-Level Resolution of the Vaginal Microbiota Using 16S Ribosomal RNA Gene Sequencing.
Van Der Pol WJ; Kumar R; Morrow CD; Blanchard EE; Taylor CM; Martin DH; Lefkowitz EJ; Muzny CA
J Infect Dis; 2019 Jan; 219(2):305-314. PubMed ID: 30535155
[TBL] [Abstract][Full Text] [Related]
2. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
3. Comparison of different hypervariable regions of 16S rRNA for taxonomic profiling of vaginal microbiota using next-generation sequencing.
Sirichoat A; Sankuntaw N; Engchanil C; Buppasiri P; Faksri K; Namwat W; Chantratita W; Lulitanond V
Arch Microbiol; 2021 Apr; 203(3):1159-1166. PubMed ID: 33221964
[TBL] [Abstract][Full Text] [Related]
4. Species-level resolution for the vaginal microbiota with short amplicons.
Qing W; Shi Y; Chen R; Zou Y; Qi C; Zhang Y; Zhou Z; Li S; Hou Y; Zhou H; Chen M
mSystems; 2024 Feb; 9(2):e0103923. PubMed ID: 38275296
[TBL] [Abstract][Full Text] [Related]
5. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
6. GSR-DB: a manually curated and optimized taxonomical database for 16S rRNA amplicon analysis.
Molano L-AG; Vega-Abellaneda S; Manichanh C
mSystems; 2024 Feb; 9(2):e0095023. PubMed ID: 38189256
[TBL] [Abstract][Full Text] [Related]
7. Species-level classification of the vaginal microbiome.
Fettweis JM; Serrano MG; Sheth NU; Mayer CM; Glascock AL; Brooks JP; Jefferson KK; ; Buck GA
BMC Genomics; 2012; 13 Suppl 8(Suppl 8):S17. PubMed ID: 23282177
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
[TBL] [Abstract][Full Text] [Related]
9. Single-Molecule Approach to 16S rRNA for Vaginal Microbiome Signatures in Response to Metronidazole Treatment.
Qin H; Jiao J; A D; Hua M; Han K; Du H; Wang Z; Li J; Zhang D; Xiao B; Chen C
Microbiol Spectr; 2023 Jun; 11(3):e0170622. PubMed ID: 37199621
[TBL] [Abstract][Full Text] [Related]
10. Assessment of
Hugerth LW; Pereira M; Zha Y; Seifert M; Kaldhusdal V; Boulund F; Krog MC; Bashir Z; Hamsten M; Fransson E; Svarre-Nielsen H; Schuppe-Koistinen I; Engstrand L
mSphere; 2020 Nov; 5(6):. PubMed ID: 33208514
[TBL] [Abstract][Full Text] [Related]
11.
Regueira-Iglesias A; Vázquez-González L; Balsa-Castro C; Blanco-Pintos T; Martín-Biedma B; Arce VM; Carreira MJ; Tomás I
Front Cell Infect Microbiol; 2021; 11():770668. PubMed ID: 35223533
[TBL] [Abstract][Full Text] [Related]
12. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
[TBL] [Abstract][Full Text] [Related]
13. Characterization of the vaginal microbiome during cytolytic vaginosis using high-throughput sequencing.
Xu H; Zhang X; Yao W; Sun Y; Zhang Y
J Clin Lab Anal; 2019 Jan; 33(1):e22653. PubMed ID: 30203607
[TBL] [Abstract][Full Text] [Related]
14. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
15. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
16. Improving Species Level-taxonomic Assignment from 16S rRNA Sequencing Technologies.
Bars-Cortina D; Moratalla-Navarro F; García-Serrano A; Mach N; Riobó-Mayo L; Vea-Barbany J; Rius-Sansalvador B; Murcia S; Obón-Santacana M; Moreno V
Curr Protoc; 2023 Nov; 3(11):e930. PubMed ID: 37988265
[TBL] [Abstract][Full Text] [Related]
17. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.
Johnson JS; Spakowicz DJ; Hong BY; Petersen LM; Demkowicz P; Chen L; Leopold SR; Hanson BM; Agresta HO; Gerstein M; Sodergren E; Weinstock GM
Nat Commun; 2019 Nov; 10(1):5029. PubMed ID: 31695033
[TBL] [Abstract][Full Text] [Related]
18. De Novo Assembly and Annotation of the Vaginal Metatranscriptome Associated with Bacterial Vaginosis.
Cho WK; Jo Y; Jeong S
Int J Mol Sci; 2022 Jan; 23(3):. PubMed ID: 35163545
[TBL] [Abstract][Full Text] [Related]
19. Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria.
Srinivasan S; Hoffman NG; Morgan MT; Matsen FA; Fiedler TL; Hall RW; Ross FJ; McCoy CO; Bumgarner R; Marrazzo JM; Fredricks DN
PLoS One; 2012; 7(6):e37818. PubMed ID: 22719852
[TBL] [Abstract][Full Text] [Related]
20. High-resolution microbiome analysis enabled by linking of 16S rRNA gene sequences with adjacent genomic contexts.
Kapustina Ž; Medžiūnė J; Alzbutas G; Rokaitis I; Matjošaitis K; Mackevičius G; Žeimytė S; Karpus L; Lubys A
Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34473015
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]