344 related articles for article (PubMed ID: 30544207)
1. Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes.
Johnson LK; Alexander H; Brown CT
Gigascience; 2019 Apr; 8(4):. PubMed ID: 30544207
[TBL] [Abstract][Full Text] [Related]
2. Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms.
Haznedaroglu BZ; Reeves D; Rismani-Yazdi H; Peccia J
BMC Bioinformatics; 2012 Jul; 13():170. PubMed ID: 22808927
[TBL] [Abstract][Full Text] [Related]
3. Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.
Cerveau N; Jackson DJ
BMC Bioinformatics; 2016 Dec; 17(1):525. PubMed ID: 27938328
[TBL] [Abstract][Full Text] [Related]
4. Improved annotation with de novo transcriptome assembly in four social amoeba species.
Singh R; Lawal HM; Schilde C; Glöckner G; Barton GJ; Schaap P; Cole C
BMC Genomics; 2017 Jan; 18(1):120. PubMed ID: 28143409
[TBL] [Abstract][Full Text] [Related]
5. Comparative performance of transcriptome assembly methods for non-model organisms.
Huang X; Chen XG; Armbruster PA
BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550
[TBL] [Abstract][Full Text] [Related]
6. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
7. Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.
Rupp O; Becker J; Brinkrolf K; Timmermann C; Borth N; Pühler A; Noll T; Goesmann A
PLoS One; 2014; 9(1):e85568. PubMed ID: 24427317
[TBL] [Abstract][Full Text] [Related]
8. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P
BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708
[TBL] [Abstract][Full Text] [Related]
9. Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.
Cahais V; Gayral P; Tsagkogeorga G; Melo-Ferreira J; Ballenghien M; Weinert L; Chiari Y; Belkhir K; Ranwez V; Galtier N
Mol Ecol Resour; 2012 Sep; 12(5):834-45. PubMed ID: 22540679
[TBL] [Abstract][Full Text] [Related]
10. Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk.
Kollmar M; Simm D
Methods Mol Biol; 2018; 1757():1-19. PubMed ID: 29761453
[TBL] [Abstract][Full Text] [Related]
11. Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of de novo assemblers.
Amin S; Prentis PJ; Gilding EK; Pavasovic A
BMC Res Notes; 2014 Aug; 7():488. PubMed ID: 25084827
[TBL] [Abstract][Full Text] [Related]
12. De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.
Birol I; Behsaz B; Hammond SA; Kucuk E; Veldhoen N; Helbing CC
PLoS One; 2015; 10(6):e0130720. PubMed ID: 26121473
[TBL] [Abstract][Full Text] [Related]
13. TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms.
Beisser D; Graupner N; Grossmann L; Timm H; Boenigk J; Rahmann S
BMC Genomics; 2017 Oct; 18(1):787. PubMed ID: 29037173
[TBL] [Abstract][Full Text] [Related]
14. A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach.
Melicher D; Torson AS; Dworkin I; Bowsher JH
BMC Genomics; 2014 Mar; 15(1):188. PubMed ID: 24621177
[TBL] [Abstract][Full Text] [Related]
15. TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms.
Seoane P; Espigares M; Carmona R; Polonio Á; Quintana J; Cretazzo E; Bota J; Pérez-García A; Dios Alché J; Gómez L; Claros MG
BMC Bioinformatics; 2018 Nov; 19(Suppl 14):416. PubMed ID: 30453874
[TBL] [Abstract][Full Text] [Related]
16. "Escalibur"-A practical pipeline for the de novo analysis of nucleotide variation in nonmodel eukaryotes.
Korhonen PK; Shaban B; Faux NG; Kinkar L; Chang BCH; Wang D; Yang B; Young ND; Gasser RB
Mol Ecol Resour; 2022 Jul; 22(5):2120-2126. PubMed ID: 35182034
[TBL] [Abstract][Full Text] [Related]
17. Exploiting orthology and de novo transcriptome assembly to refine target sequence information.
Söllner JF; Leparc G; Zwick M; Schönberger T; Hildebrandt T; Nieselt K; Simon E
BMC Med Genomics; 2019 May; 12(1):69. PubMed ID: 31122257
[TBL] [Abstract][Full Text] [Related]
18. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
[TBL] [Abstract][Full Text] [Related]
19. Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut.
Sadat-Hosseini M; Bakhtiarizadeh MR; Boroomand N; Tohidfar M; Vahdati K
PLoS One; 2020; 15(4):e0232005. PubMed ID: 32343733
[TBL] [Abstract][Full Text] [Related]
20. Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
Feldmeyer B; Wheat CW; Krezdorn N; Rotter B; Pfenninger M
BMC Genomics; 2011 Jun; 12():317. PubMed ID: 21679424
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]