137 related articles for article (PubMed ID: 30573814)
1. Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing.
Xu H; Fair BJ; Dwyer ZW; Gildea M; Pleiss JA
Nat Methods; 2019 Jan; 16(1):55-58. PubMed ID: 30573814
[TBL] [Abstract][Full Text] [Related]
2. Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates.
Gildea MA; Dwyer ZW; Pleiss JA
Methods; 2020 Apr; 176():34-45. PubMed ID: 31121301
[TBL] [Abstract][Full Text] [Related]
3. Sequencing of lariat termini in S. cerevisiae reveals 5' splice sites, branch points, and novel splicing events.
Qin D; Huang L; Wlodaver A; Andrade J; Staley JP
RNA; 2016 Feb; 22(2):237-53. PubMed ID: 26647463
[TBL] [Abstract][Full Text] [Related]
4. Yeast pre-mRNA splicing requires a minimum distance between the 5' splice site and the internal branch acceptor site.
Thompson-Jäger S; Domdey H
Mol Cell Biol; 1987 Nov; 7(11):4010-6. PubMed ID: 3323885
[TBL] [Abstract][Full Text] [Related]
5. RNA-Seq approach for accurate characterization of splicing efficiency of yeast introns.
Xia X
Methods; 2020 Apr; 176():25-33. PubMed ID: 30926533
[TBL] [Abstract][Full Text] [Related]
6. Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data.
Převorovský M; Hálová M; Abrhámová K; Libus J; Folk P
Biomed Res Int; 2016; 2016():4783841. PubMed ID: 28050562
[TBL] [Abstract][Full Text] [Related]
7. The untranslated leader of nuclear COX4 gene of Saccharomyces cerevisiae contains an intron.
Schneider JC; Guarente L
Nucleic Acids Res; 1987 Apr; 15(8):3515-29. PubMed ID: 3033605
[TBL] [Abstract][Full Text] [Related]
8. Identification of new branch points and unconventional introns in Saccharomyces cerevisiae.
Gould GM; Paggi JM; Guo Y; Phizicky DV; Zinshteyn B; Wang ET; Gilbert WV; Gifford DK; Burge CB
RNA; 2016 Oct; 22(10):1522-34. PubMed ID: 27473169
[TBL] [Abstract][Full Text] [Related]
9. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Lucks JB; Mortimer SA; Trapnell C; Luo S; Aviran S; Schroth GP; Pachter L; Doudna JA; Arkin AP
Proc Natl Acad Sci U S A; 2011 Jul; 108(27):11063-8. PubMed ID: 21642531
[TBL] [Abstract][Full Text] [Related]
10. Multi-targeted priming for genome-wide gene expression assays.
Adomas AB; Lopez-Giraldez F; Clark TA; Wang Z; Townsend JP
BMC Genomics; 2010 Aug; 11():477. PubMed ID: 20716356
[TBL] [Abstract][Full Text] [Related]
11. Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae.
Kawashima T; Douglass S; Gabunilas J; Pellegrini M; Chanfreau GF
PLoS Genet; 2014 Apr; 10(4):e1004249. PubMed ID: 24722551
[TBL] [Abstract][Full Text] [Related]
12. A broad analysis of splicing regulation in yeast using a large library of synthetic introns.
Schirman D; Yakhini Z; Pilpel Y; Dahan O
PLoS Genet; 2021 Sep; 17(9):e1009805. PubMed ID: 34570750
[TBL] [Abstract][Full Text] [Related]
13. Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids.
Cuypers B; Domagalska MA; Meysman P; Muylder G; Vanaerschot M; Imamura H; Dumetz F; Verdonckt TW; Myler PJ; Ramasamy G; Laukens K; Dujardin JC
Sci Rep; 2017 Jun; 7(1):3725. PubMed ID: 28623350
[TBL] [Abstract][Full Text] [Related]
14. Yeast mRNA splicing in vitro.
Lin RJ; Newman AJ; Cheng SC; Abelson J
J Biol Chem; 1985 Nov; 260(27):14780-92. PubMed ID: 2997224
[TBL] [Abstract][Full Text] [Related]
15. Ultra-deep sequencing reveals pre-mRNA splicing as a sequence driven high-fidelity process.
Reynolds DJ; Hertel KJ
PLoS One; 2019; 14(10):e0223132. PubMed ID: 31581208
[TBL] [Abstract][Full Text] [Related]
16. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
17. Observations on novel splice junctions from RNA sequencing data.
Wang L; Wang X; Wang X; Liang Y; Zhang X
Biochem Biophys Res Commun; 2011 Jun; 409(2):299-303. PubMed ID: 21575597
[TBL] [Abstract][Full Text] [Related]
18. Splice site choice and splicing efficiency are positively influenced by pre-mRNA intramolecular base pairing in yeast.
Goguel V; Rosbash M
Cell; 1993 Mar; 72(6):893-901. PubMed ID: 8458083
[TBL] [Abstract][Full Text] [Related]
19. Determination of in vivo RNA kinetics using RATE-seq.
Neymotin B; Athanasiadou R; Gresham D
RNA; 2014 Oct; 20(10):1645-52. PubMed ID: 25161313
[TBL] [Abstract][Full Text] [Related]
20. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
Martinez-Nunez RT; Sanford JR
Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]