194 related articles for article (PubMed ID: 30590436)
1. Homeolog expression quantification methods for allopolyploids.
Kuo TCY; Hatakeyama M; Tameshige T; Shimizu KK; Sese J
Brief Bioinform; 2020 Mar; 21(2):395-407. PubMed ID: 30590436
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis.
Akama S; Shimizu-Inatsugi R; Shimizu KK; Sese J
Nucleic Acids Res; 2014 Apr; 42(6):e46. PubMed ID: 24423873
[TBL] [Abstract][Full Text] [Related]
3. Transcriptome asymmetry in synthetic and natural allotetraploid wheats, revealed by RNA-sequencing.
Wang X; Zhang H; Li Y; Zhang Z; Li L; Liu B
New Phytol; 2016 Feb; 209(3):1264-77. PubMed ID: 26436593
[TBL] [Abstract][Full Text] [Related]
4. Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry.
Yang X; Yu H; Sun W; Ding L; Li J; Cheema J; Ramirez-Gonzalez R; Zhao X; MartÃn AC; Lu F; Liu B; Uauy C; Ding Y; Zhang H
Genome Biol; 2021 Nov; 22(1):326. PubMed ID: 34847934
[TBL] [Abstract][Full Text] [Related]
5. Genome shock in a synthetic allotetraploid wheat invokes subgenome-partitioned gene regulation, meiotic instability, and karyotype variation.
Sha Y; Li Y; Zhang D; Lv R; Wang H; Wang R; Ji H; Li S; Gong L; Li N; Liu B
J Exp Bot; 2023 Sep; 74(18):5547-5563. PubMed ID: 37379452
[TBL] [Abstract][Full Text] [Related]
6. A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat.
Sun J; Okada M; Tameshige T; Shimizu-Inatsugi R; Akiyama R; Nagano AJ; Sese J; Shimizu KK
NAR Genom Bioinform; 2023 Sep; 5(3):lqad067. PubMed ID: 37448590
[TBL] [Abstract][Full Text] [Related]
7. HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids.
Mithani A; Belfield EJ; Brown C; Jiang C; Leach LJ; Harberd NP
BMC Genomics; 2013 Sep; 14():653. PubMed ID: 24063258
[TBL] [Abstract][Full Text] [Related]
8. The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias.
Powell JJ; Fitzgerald TL; Stiller J; Berkman PJ; Gardiner DM; Manners JM; Henry RJ; Kazan K
Plant Biotechnol J; 2017 Apr; 15(4):533-543. PubMed ID: 27735125
[TBL] [Abstract][Full Text] [Related]
9. Nonadditive changes in genome size during allopolyploidization in the wheat (aegilops-triticum) group.
Ozkan H; Tuna M; Arumuganathan K
J Hered; 2003; 94(3):260-4. PubMed ID: 12816968
[TBL] [Abstract][Full Text] [Related]
10. Distinct nucleotide patterns among three subgenomes of bread wheat and their potential origins during domestication after allopolyploidization.
Zhao Y; Dong L; Jiang C; Wang X; Xie J; Rashid MAR; Liu Y; Li M; Bu Z; Wang H; Ma X; Sun S; Wang X; Bo C; Zhou T; Kong L
BMC Biol; 2020 Dec; 18(1):188. PubMed ID: 33267868
[TBL] [Abstract][Full Text] [Related]
11. Three genomes differentially contribute to the seedling lateral root number in allohexaploid wheat: evidence from phenotype evolution and gene expression.
Wang H; Hu Z; Huang K; Han Y; Zhao A; Han H; Song L; Fan C; Li R; Xin M; Peng H; Yao Y; Sun Q; Ni Z
Plant J; 2018 Sep; 95(6):976-987. PubMed ID: 29932270
[TBL] [Abstract][Full Text] [Related]
12. Changes in Alternative Splicing in Response to Domestication and Polyploidization in Wheat.
Yu K; Feng M; Yang G; Sun L; Qin Z; Cao J; Wen J; Li H; Zhou Y; Chen X; Peng H; Yao Y; Hu Z; Guo W; Sun Q; Ni Z; Adams K; Xin M
Plant Physiol; 2020 Dec; 184(4):1955-1968. PubMed ID: 33051269
[TBL] [Abstract][Full Text] [Related]
13. Identification and characterization of genes on a single subgenome in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring'.
Ma J; Zheng Z; Stiller J; Lan XJ; Liu Y; Deng M; Wang P; Pu Z; Chen G; Jiang QT; Wei Y; Zheng YL
Genome; 2017 Mar; 60(3):208-215. PubMed ID: 28098486
[TBL] [Abstract][Full Text] [Related]
14. Evolution of Homeologous Gene Expression in Polyploid Wheat.
Zhao N; Dong Q; Nadon BD; Ding X; Wang X; Dong Y; Liu B; Jackson SA; Xu C
Genes (Basel); 2020 Nov; 11(12):. PubMed ID: 33255795
[TBL] [Abstract][Full Text] [Related]
15. Making the Bread: Insights from Newly Synthesized Allohexaploid Wheat.
Li AL; Geng SF; Zhang LQ; Liu DC; Mao L
Mol Plant; 2015 Jun; 8(6):847-59. PubMed ID: 25747845
[TBL] [Abstract][Full Text] [Related]
16. Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids.
Hu G; Grover CE; Arick MA; Liu M; Peterson DG; Wendel JF
Brief Bioinform; 2021 Mar; 22(2):1819-1835. PubMed ID: 32219306
[TBL] [Abstract][Full Text] [Related]
17. A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species.
Ilut DC; Coate JE; Luciano AK; Owens TG; May GD; Farmer A; Doyle JJ
Am J Bot; 2012 Feb; 99(2):383-96. PubMed ID: 22301896
[TBL] [Abstract][Full Text] [Related]
18. The abundance of homoeologue transcripts is disrupted by hybridization and is partially restored by genome doubling in synthetic hexaploid wheat.
Hao M; Li A; Shi T; Luo J; Zhang L; Zhang X; Ning S; Yuan Z; Zeng D; Kong X; Li X; Zheng H; Lan X; Zhang H; Zheng Y; Mao L; Liu D
BMC Genomics; 2017 Feb; 18(1):149. PubMed ID: 28187716
[TBL] [Abstract][Full Text] [Related]
19. Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica.
Paape T; Hatakeyama M; Shimizu-Inatsugi R; Cereghetti T; Onda Y; Kenta T; Sese J; Shimizu KK
Mol Biol Evol; 2016 Nov; 33(11):2781-2800. PubMed ID: 27413047
[TBL] [Abstract][Full Text] [Related]
20. SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome-specific k-mers.
Jia KH; Wang ZX; Wang L; Li GY; Zhang W; Wang XL; Xu FJ; Jiao SQ; Zhou SS; Liu H; Ma Y; Bi G; Zhao W; El-Kassaby YA; Porth I; Li G; Zhang RG; Mao JF
New Phytol; 2022 Jul; 235(2):801-809. PubMed ID: 35460274
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]