376 related articles for article (PubMed ID: 30591009)
1. Reconstructing high-resolution chromosome three-dimensional structures by Hi-C complex networks.
Liu T; Wang Z
BMC Bioinformatics; 2018 Dec; 19(Suppl 17):496. PubMed ID: 30591009
[TBL] [Abstract][Full Text] [Related]
2. TADKB: Family classification and a knowledge base of topologically associating domains.
Liu T; Porter J; Zhao C; Zhu H; Wang N; Sun Z; Mo YY; Wang Z
BMC Genomics; 2019 Mar; 20(1):217. PubMed ID: 30871473
[TBL] [Abstract][Full Text] [Related]
3. Exploring the 2D and 3D structural properties of topologically associating domains.
Liu T; Wang Z
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):592. PubMed ID: 31787081
[TBL] [Abstract][Full Text] [Related]
4. Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing.
Adhikari B; Trieu T; Cheng J
BMC Genomics; 2016 Nov; 17(1):886. PubMed ID: 27821047
[TBL] [Abstract][Full Text] [Related]
5. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
Oluwadare O; Cheng J
BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
[TBL] [Abstract][Full Text] [Related]
6. SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data.
Zhu H; Wang Z
Bioinformatics; 2019 Oct; 35(20):3981-3988. PubMed ID: 30865261
[TBL] [Abstract][Full Text] [Related]
7. Heterogeneous Loop Model to Infer 3D Chromosome Structures from Hi-C.
Liu L; Kim MH; Hyeon C
Biophys J; 2019 Aug; 117(3):613-625. PubMed ID: 31337548
[TBL] [Abstract][Full Text] [Related]
8. A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data.
Oluwadare O; Zhang Y; Cheng J
BMC Genomics; 2018 Feb; 19(1):161. PubMed ID: 29471801
[TBL] [Abstract][Full Text] [Related]
9. Inferring the three-dimensional structures of the X-chromosome during X-inactivation.
Zhu H; Wang N; Sun JZ; Pandey RB; Wang Z
Math Biosci Eng; 2019 Aug; 16(6):7384-7404. PubMed ID: 31698618
[TBL] [Abstract][Full Text] [Related]
10. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription.
Giorgetti L; Galupa R; Nora EP; Piolot T; Lam F; Dekker J; Tiana G; Heard E
Cell; 2014 May; 157(4):950-63. PubMed ID: 24813616
[TBL] [Abstract][Full Text] [Related]
11. Modelling genome-wide topological associating domains in mouse embryonic stem cells.
Zhan Y; Giorgetti L; Tiana G
Chromosome Res; 2017 Mar; 25(1):5-14. PubMed ID: 28108933
[TBL] [Abstract][Full Text] [Related]
12. Structural basis for the preservation of a subset of topologically associating domains in interphase chromosomes upon cohesin depletion.
Jeong D; Shi G; Li X; Thirumalai D
Elife; 2024 Mar; 12():. PubMed ID: 38502563
[TBL] [Abstract][Full Text] [Related]
13. Methods for the Analysis of Topologically Associating Domains (TADs).
Zufferey M; Tavernari D; Ciriello G
Methods Mol Biol; 2022; 2301():39-59. PubMed ID: 34415530
[TBL] [Abstract][Full Text] [Related]
14. Inferring Single-Cell 3D Chromosomal Structures Based on the Lennard-Jones Potential.
Zha M; Wang N; Zhang C; Wang Z
Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34072879
[TBL] [Abstract][Full Text] [Related]
15. MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.
Yan KK; Lou S; Gerstein M
PLoS Comput Biol; 2017 Jul; 13(7):e1005647. PubMed ID: 28742097
[TBL] [Abstract][Full Text] [Related]
16. Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2.
Kaul A; Bhattacharyya S; Ay F
Nat Protoc; 2020 Mar; 15(3):991-1012. PubMed ID: 31980751
[TBL] [Abstract][Full Text] [Related]
17. A comparison of topologically associating domain callers over mammals at high resolution.
Sefer E
BMC Bioinformatics; 2022 Apr; 23(1):127. PubMed ID: 35413815
[TBL] [Abstract][Full Text] [Related]
18. A statistical approach for inferring the 3D structure of the genome.
Varoquaux N; Ay F; Noble WS; Vert JP
Bioinformatics; 2014 Jun; 30(12):i26-33. PubMed ID: 24931992
[TBL] [Abstract][Full Text] [Related]
19. Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes.
Zhan Y; Mariani L; Barozzi I; Schulz EG; Blüthgen N; Stadler M; Tiana G; Giorgetti L
Genome Res; 2017 Mar; 27(3):479-490. PubMed ID: 28057745
[TBL] [Abstract][Full Text] [Related]
20. Evaluation of 3D Chromatin Interactions Using Hi-C.
Hu G
Methods Mol Biol; 2020; 2117():65-78. PubMed ID: 31960372
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]