BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

105 related articles for article (PubMed ID: 30596645)

  • 1. Enabling precision medicine via standard communication of HTS provenance, analysis, and results.
    Alterovitz G; Dean D; Goble C; Crusoe MR; Soiland-Reyes S; Bell A; Hayes A; Suresh A; Purkayastha A; King CH; Taylor D; Johanson E; Thompson EE; Donaldson E; Morizono H; Tsang H; Vora JK; Goecks J; Yao J; Almeida JS; Keeney J; Addepalli K; Krampis K; Smith KM; Guo L; Walderhaug M; Schito M; Ezewudo M; Guimera N; Walsh P; Kahsay R; Gottipati S; Rodwell TC; Bloom T; Lai Y; Simonyan V; Mazumder R
    PLoS Biol; 2018 Dec; 16(12):e3000099. PubMed ID: 30596645
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bioinformatics tools developed to support BioCompute Objects.
    Patel JA; Dean DA; King CH; Xiao N; Koc S; Minina E; Golikov A; Brooks P; Kahsay R; Navelkar R; Ray M; Roberson D; Armstrong C; Mazumder R; Keeney J
    Database (Oxford); 2021 Mar; 2021():. PubMed ID: 33784373
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Communicating computational workflows in a regulatory environment.
    Keeney JG; Gulzar N; Baker JB; Klempir O; Hannigan GD; Bitton DA; Maritz JM; King CHS; Patel JA; Duncan P; Mazumder R
    Drug Discov Today; 2024 Mar; 29(3):103884. PubMed ID: 38219969
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training.
    Griffiths EJ; Mendes I; Maguire F; Guthrie JL; Wee BA; Schmedes S; Holt K; Yadav C; Cameron R; Barclay C; Dooley D; MacCannell D; Chindelevitch L; Karsch-Mizrachi I; Waheed Z; Katz L; Petit Iii R; Dave M; Oluniyi P; Nasar MI; Raphenya A; Hsiao WWL; Timme RE
    Microb Genom; 2024 Jun; 10(6):. PubMed ID: 38860884
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution.
    Kluge M; Friedl MS; Menzel AL; Friedel CC
    Gigascience; 2020 Jun; 9(6):. PubMed ID: 32556167
    [TBL] [Abstract][Full Text] [Related]  

  • 6. HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking.
    Lazaris C; Kelly S; Ntziachristos P; Aifantis I; Tsirigos A
    BMC Genomics; 2017 Jan; 18(1):22. PubMed ID: 28056762
    [TBL] [Abstract][Full Text] [Related]  

  • 7. REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA.
    Callahan B; Proctor D; Relman D; Fukuyama J; Holmes S
    Pac Symp Biocomput; 2016; 21():183-94. PubMed ID: 26776185
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry.
    Mohammed Taha H; Aalizadeh R; Alygizakis N; Antignac JP; Arp HPH; Bade R; Baker N; Belova L; Bijlsma L; Bolton EE; Brack W; Celma A; Chen WL; Cheng T; Chirsir P; Čirka Ľ; D'Agostino LA; Djoumbou Feunang Y; Dulio V; Fischer S; Gago-Ferrero P; Galani A; Geueke B; Głowacka N; Glüge J; Groh K; Grosse S; Haglund P; Hakkinen PJ; Hale SE; Hernandez F; Janssen EM; Jonkers T; Kiefer K; Kirchner M; Koschorreck J; Krauss M; Krier J; Lamoree MH; Letzel M; Letzel T; Li Q; Little J; Liu Y; Lunderberg DM; Martin JW; McEachran AD; McLean JA; Meier C; Meijer J; Menger F; Merino C; Muncke J; Muschket M; Neumann M; Neveu V; Ng K; Oberacher H; O'Brien J; Oswald P; Oswaldova M; Picache JA; Postigo C; Ramirez N; Reemtsma T; Renaud J; Rostkowski P; Rüdel H; Salek RM; Samanipour S; Scheringer M; Schliebner I; Schulz W; Schulze T; Sengl M; Shoemaker BA; Sims K; Singer H; Singh RR; Sumarah M; Thiessen PA; Thomas KV; Torres S; Trier X; van Wezel AP; Vermeulen RCH; Vlaanderen JJ; von der Ohe PC; Wang Z; Williams AJ; Willighagen EL; Wishart DS; Zhang J; Thomaidis NS; Hollender J; Slobodnik J; Schymanski EL
    Environ Sci Eur; 2022; 34(1):104. PubMed ID: 36284750
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FAIR data retrieval for sensitive clinical research data in Galaxy.
    Ouwerkerk J; Rasche H; Spalding JD; Hiltemann S; Stubbs AP
    Gigascience; 2024 Jan; 13():. PubMed ID: 38280189
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Personalized genome structure via single gamete sequencing.
    Lyu R; Tsui V; McCarthy DJ; Crismani W
    Genome Biol; 2021 Apr; 22(1):112. PubMed ID: 33874978
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hadoop and PySpark for reproducibility and scalability of genomic sequencing studies.
    Wheeler NR; Benchek P; Kunkle BW; Hamilton-Nelson KL; Warfe M; Fondran JR; Haines JL; Bush WS
    Pac Symp Biocomput; 2020; 25():523-534. PubMed ID: 31797624
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Operationalizing Quality Assurance for Clinical Illumina Somatic Next-Generation Sequencing Pipelines.
    Bridgers J; Alexander K; Karsan A
    J Mol Diagn; 2024 Feb; 26(2):96-105. PubMed ID: 38086510
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics.
    Cornet L; Durieu B; Baert F; D'hooge E; Colignon D; Meunier L; Lupo V; Cleenwerck I; Daniel HM; Rigouts L; Sirjacobs D; Declerck S; Vandamme P; Wilmotte A; Baurain D; Becker P
    Gigascience; 2022 Dec; 12():. PubMed ID: 37036103
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets.
    Gutiérrez-Sacristán A; De Niz C; Kothari C; Kong SW; Mandl KD; Avillach P
    Brief Bioinform; 2021 Jan; 22(1):55-65. PubMed ID: 32249310
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
    Mayer G; Müller W; Schork K; Uszkoreit J; Weidemann A; Wittig U; Rey M; Quast C; Felden J; Glöckner FO; Lange M; Arend D; Beier S; Junker A; Scholz U; Schüler D; Kestler HA; Wibberg D; Pühler A; Twardziok S; Eils J; Eils R; Hoffmann S; Eisenacher M; Turewicz M
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33589928
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FAIR Header Reference genome: a TRUSTworthy standard.
    Wright A; Wilkinson MD; Mungall C; Cain S; Richards S; Sternberg P; Provin E; Jacobs JL; Geib S; Raciti D; Yook K; Stein L; Molik DC
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38555475
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A workflow reproducibility scale for automatic validation of biological interpretation results.
    Suetake H; Fukusato T; Igarashi T; Ohta T
    Gigascience; 2022 Dec; 12():. PubMed ID: 37150537
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Bayesian modelling of time series data (BayModTS)-a FAIR workflow to process sparse and highly variable data.
    Höpfl S; Albadry M; Dahmen U; Herrmann KH; Kindler EM; König M; Reichenbach JR; Tautenhahn HM; Wei W; Zhao WT; Radde NE
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38741151
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FAIR-USE4OS: Guidelines for creating impactful open-source software.
    Sonabend R; Gruson H; Wolansky L; Kiragga A; Katz DS
    PLoS Comput Biol; 2024 May; 20(5):e1012045. PubMed ID: 38722873
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard.
    Wright A; Wilkinson MD; Mungall C; Cain S; Richards S; Sternberg P; Provin E; Jacobs JL; Geib S; Raciti D; Yook K; Stein L; Molik DC
    bioRxiv; 2023 Dec; ():. PubMed ID: 38076838
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.