223 related articles for article (PubMed ID: 30596994)
1. MoMo: discovery of statistically significant post-translational modification motifs.
Cheng A; Grant CE; Noble WS; Bailey TL
Bioinformatics; 2019 Aug; 35(16):2774-2782. PubMed ID: 30596994
[TBL] [Abstract][Full Text] [Related]
2. STREME: accurate and versatile sequence motif discovery.
Bailey TL
Bioinformatics; 2021 Sep; 37(18):2834-2840. PubMed ID: 33760053
[TBL] [Abstract][Full Text] [Related]
3. Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry.
Chung C; Emili A; Frey BJ
Bioinformatics; 2013 Apr; 29(7):821-9. PubMed ID: 23419374
[TBL] [Abstract][Full Text] [Related]
4. MEME SUITE: tools for motif discovery and searching.
Bailey TL; Boden M; Buske FA; Frith M; Grant CE; Clementi L; Ren J; Li WW; Noble WS
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W202-8. PubMed ID: 19458158
[TBL] [Abstract][Full Text] [Related]
5. PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.
Kertész-Farkas A; Reiz B; Vera R; Myers MP; Pongor S
Bioinformatics; 2014 Jan; 30(2):234-41. PubMed ID: 24215026
[TBL] [Abstract][Full Text] [Related]
6. Biological sequence motif discovery using motif-x.
Chou MF; Schwartz D
Curr Protoc Bioinformatics; 2011 Sep; Chapter 13():13.15.1-13.15.24. PubMed ID: 21901740
[TBL] [Abstract][Full Text] [Related]
7. Computational refinement of post-translational modifications predicted from tandem mass spectrometry.
Chung C; Liu J; Emili A; Frey BJ
Bioinformatics; 2011 Mar; 27(6):797-806. PubMed ID: 21258065
[TBL] [Abstract][Full Text] [Related]
8. MMFPh: a maximal motif finder for phosphoproteomics datasets.
Wang T; Kettenbach AN; Gerber SA; Bailey-Kellogg C
Bioinformatics; 2012 Jun; 28(12):1562-70. PubMed ID: 22531218
[TBL] [Abstract][Full Text] [Related]
9. Systematic characterization and prediction of post-translational modification cross-talk between proteins.
Huang R; Huang Y; Guo Y; Ji S; Lu M; Li T
Bioinformatics; 2019 Aug; 35(15):2626-2633. PubMed ID: 30590394
[TBL] [Abstract][Full Text] [Related]
10. MEME: discovering and analyzing DNA and protein sequence motifs.
Bailey TL; Williams N; Misleh C; Li WW
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W369-73. PubMed ID: 16845028
[TBL] [Abstract][Full Text] [Related]
11. MCAST: scanning for cis-regulatory motif clusters.
Grant CE; Johnson J; Bailey TL; Noble WS
Bioinformatics; 2016 Apr; 32(8):1217-9. PubMed ID: 26704599
[TBL] [Abstract][Full Text] [Related]
12. ISPTM: an iterative search algorithm for systematic identification of post-translational modifications from complex proteome mixtures.
Huang X; Huang L; Peng H; Guru A; Xue W; Hong SY; Liu M; Sharma S; Fu K; Caprez AP; Swanson DR; Zhang Z; Ding SJ
J Proteome Res; 2013 Sep; 12(9):3831-42. PubMed ID: 23919725
[TBL] [Abstract][Full Text] [Related]
13. PTM-Logo: a program for generation of sequence logos based on position-specific background amino-acid probabilities.
Saethang T; Hodge K; Yang CR; Zhao Y; Kimkong I; Knepper MA; Pisitkun T
Bioinformatics; 2019 Dec; 35(24):5313-5314. PubMed ID: 31318409
[TBL] [Abstract][Full Text] [Related]
14. MSModDetector: a tool for detecting mass shifts and post-translational modifications in individual ion mass spectrometry data.
Faizi M; Fellers RT; Lu D; Drown BS; Jambhekar A; Lahav G; Kelleher NL; Gunawardena J
Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38796681
[TBL] [Abstract][Full Text] [Related]
15. Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry.
Martin DM; Nett IR; Vandermoere F; Barber JD; Morrice NA; Ferguson MA
Bioinformatics; 2010 Sep; 26(17):2153-9. PubMed ID: 20651112
[TBL] [Abstract][Full Text] [Related]
16. Predicting protein post-translational modifications using meta-analysis of proteome scale data sets.
Schwartz D; Chou MF; Church GM
Mol Cell Proteomics; 2009 Feb; 8(2):365-79. PubMed ID: 18974045
[TBL] [Abstract][Full Text] [Related]
17. BEAM web server: a tool for structural RNA motif discovery.
Pietrosanto M; Adinolfi M; Casula R; Ausiello G; Ferrè F; Helmer-Citterich M
Bioinformatics; 2018 Mar; 34(6):1058-1060. PubMed ID: 29095974
[TBL] [Abstract][Full Text] [Related]
18. A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs.
Seitzer P; Wilbanks EG; Larsen DJ; Facciotti MT
BMC Bioinformatics; 2012 Nov; 13():317. PubMed ID: 23181585
[TBL] [Abstract][Full Text] [Related]
19. Discovery of protein phosphorylation motifs through exploratory data analysis.
Chen YC; Aguan K; Yang CW; Wang YT; Pal NR; Chung IF
PLoS One; 2011; 6(5):e20025. PubMed ID: 21647451
[TBL] [Abstract][Full Text] [Related]
20. MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra.
Kim S; Na S; Sim JW; Park H; Jeong J; Kim H; Seo Y; Seo J; Lee KJ; Paek E
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W258-63. PubMed ID: 16845006
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]