182 related articles for article (PubMed ID: 30616524)
1. funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model.
Meher PK; Sahu TK; Gahoi S; Tomar R; Rao AR
BMC Genet; 2019 Jan; 20(1):2. PubMed ID: 30616524
[TBL] [Abstract][Full Text] [Related]
2. Its2vec: Fungal Species Identification Using Sequence Embedding and Random Forest Classification.
Wang C; Zhang Y; Han S
Biomed Res Int; 2020; 2020():2468789. PubMed ID: 32566672
[TBL] [Abstract][Full Text] [Related]
3. Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants.
Tanabe AS; Toju H
PLoS One; 2013; 8(10):e76910. PubMed ID: 24204702
[TBL] [Abstract][Full Text] [Related]
4. Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier.
Meher PK; Sahu TK; Rao AR
Gene; 2016 Nov; 592(2):316-24. PubMed ID: 27393648
[TBL] [Abstract][Full Text] [Related]
5. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.
Nilsson RH; Larsson KH; Taylor AFS; Bengtsson-Palme J; Jeppesen TS; Schigel D; Kennedy P; Picard K; Glöckner FO; Tedersoo L; Saar I; Kõljalg U; Abarenkov K
Nucleic Acids Res; 2019 Jan; 47(D1):D259-D264. PubMed ID: 30371820
[TBL] [Abstract][Full Text] [Related]
6. Database establishment for the secondary fungal DNA barcode
Meyer W; Irinyi L; Hoang MTV; Robert V; Garcia-Hermoso D; Desnos-Ollivier M; Yurayart C; Tsang CC; Lee CY; Woo PCY; Pchelin IM; Uhrlaß S; Nenoff P; Chindamporn A; Chen S; Hebert PDN; Sorrell TC;
Genome; 2019 Mar; 62(3):160-169. PubMed ID: 30465691
[TBL] [Abstract][Full Text] [Related]
7. Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera.
Martín MP; Daniëls PP; Erickson D; Spouge JL
PLoS One; 2020; 15(8):e0237507. PubMed ID: 32813726
[TBL] [Abstract][Full Text] [Related]
8. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.
Schoch CL; Seifert KA; Huhndorf S; Robert V; Spouge JL; Levesque CA; Chen W; ;
Proc Natl Acad Sci U S A; 2012 Apr; 109(16):6241-6. PubMed ID: 22454494
[TBL] [Abstract][Full Text] [Related]
9. CNN_FunBar: Advanced Learning Technique for Fungi ITS Region Classification.
Das R; Rai A; Mishra DC
Genes (Basel); 2023 Mar; 14(3):. PubMed ID: 36980906
[TBL] [Abstract][Full Text] [Related]
10. Fungal DNA barcoding.
Xu J
Genome; 2016 Nov; 59(11):913-932. PubMed ID: 27829306
[TBL] [Abstract][Full Text] [Related]
11. Characterizing the ribosomal tandem repeat and its utility as a DNA barcode in lichen-forming fungi.
Bradshaw M; Grewe F; Thomas A; Harrison CH; Lindgren H; Muggia L; St Clair LL; Lumbsch HT; Leavitt SD
BMC Evol Biol; 2020 Jan; 20(1):2. PubMed ID: 31906844
[TBL] [Abstract][Full Text] [Related]
12. Towards a unified paradigm for sequence-based identification of fungi.
Kõljalg U; Nilsson RH; Abarenkov K; Tedersoo L; Taylor AF; Bahram M; Bates ST; Bruns TD; Bengtsson-Palme J; Callaghan TM; Douglas B; Drenkhan T; Eberhardt U; Dueñas M; Grebenc T; Griffith GW; Hartmann M; Kirk PM; Kohout P; Larsson E; Lindahl BD; Lücking R; Martín MP; Matheny PB; Nguyen NH; Niskanen T; Oja J; Peay KG; Peintner U; Peterson M; Põldmaa K; Saag L; Saar I; Schüßler A; Scott JA; Senés C; Smith ME; Suija A; Taylor DL; Telleria MT; Weiss M; Larsson KH
Mol Ecol; 2013 Nov; 22(21):5271-7. PubMed ID: 24112409
[TBL] [Abstract][Full Text] [Related]
13. A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network.
Fiannaca A; La Rosa M; Rizzo R; Urso A
Artif Intell Med; 2015 Jul; 64(3):173-84. PubMed ID: 26170017
[TBL] [Abstract][Full Text] [Related]
14. A new method for species identification via protein-coding and non-coding DNA barcodes by combining machine learning with bioinformatic methods.
Zhang AB; Feng J; Ward RD; Wan P; Gao Q; Wu J; Zhao WZ
PLoS One; 2012; 7(2):e30986. PubMed ID: 22363527
[TBL] [Abstract][Full Text] [Related]
15. Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons.
Clemmensen KE; Ihrmark K; Durling MB; Lindahl BD
Methods Mol Biol; 2016; 1399():61-88. PubMed ID: 26791497
[TBL] [Abstract][Full Text] [Related]
16. Introducing ribosomal tandem repeat barcoding for fungi.
Wurzbacher C; Larsson E; Bengtsson-Palme J; Van den Wyngaert S; Svantesson S; Kristiansson E; Kagami M; Nilsson RH
Mol Ecol Resour; 2019 Jan; 19(1):118-127. PubMed ID: 30240145
[TBL] [Abstract][Full Text] [Related]
17. Nucleotide Sequence Database Comparison for Routine Dermatophyte Identification by Internal Transcribed Spacer 2 Genetic Region DNA Barcoding.
Normand AC; Packeu A; Cassagne C; Hendrickx M; Ranque S; Piarroux R
J Clin Microbiol; 2018 May; 56(5):. PubMed ID: 29491019
[TBL] [Abstract][Full Text] [Related]
18. Assessment of BOLD and GenBank - Their accuracy and reliability for the identification of biological materials.
Meiklejohn KA; Damaso N; Robertson JM
PLoS One; 2019; 14(6):e0217084. PubMed ID: 31216285
[TBL] [Abstract][Full Text] [Related]
19. Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.
Suwannasai N; Martín MP; Phosri C; Sihanonth P; Whalley AJ; Spouge JL
PLoS One; 2013; 8(2):e54529. PubMed ID: 23390499
[TBL] [Abstract][Full Text] [Related]
20. Dnabarcoder: An open-source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification.
Vu D; Nilsson RH; Verkley GJM
Mol Ecol Resour; 2022 Oct; 22(7):2793-2809. PubMed ID: 35621380
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
