BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

121 related articles for article (PubMed ID: 30632747)

  • 1. DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings.
    Jarmolinska AI; Zhou Q; Sulkowska JI; Morcos F
    J Chem Inf Model; 2019 Feb; 59(2):625-629. PubMed ID: 30632747
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A reproducibility analysis-based statistical framework for residue-residue evolutionary coupling detection.
    Si Y; Zhang Y; Yan C
    Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35037015
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PyLasso: a PyMOL plugin to identify lassos.
    Gierut AM; Niemyska W; Dabrowski-Tumanski P; Sulkowski P; Sulkowska JI
    Bioinformatics; 2017 Dec; 33(23):3819-3821. PubMed ID: 28961868
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Correlated mutations select misfolded from properly folded proteins.
    Wozniak PP; Vriend G; Kotulska M
    Bioinformatics; 2017 May; 33(10):1497-1504. PubMed ID: 28203707
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Coevolutionary Analysis of Protein Sequences for Molecular Modeling.
    Malinverni D; Barducci A
    Methods Mol Biol; 2019; 2022():379-397. PubMed ID: 31396912
    [TBL] [Abstract][Full Text] [Related]  

  • 6. On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins.
    Rodriguez Horta E; Weigt M
    PLoS Comput Biol; 2021 May; 17(5):e1008957. PubMed ID: 34029316
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assessing the accuracy of direct-coupling analysis for RNA contact prediction.
    Cuturello F; Tiana G; Bussi G
    RNA; 2020 May; 26(5):637-647. PubMed ID: 32115426
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Direct-coupling analysis of residue coevolution captures native contacts across many protein families.
    Morcos F; Pagnani A; Lunt B; Bertolino A; Marks DS; Sander C; Zecchina R; Onuchic JN; Hwa T; Weigt M
    Proc Natl Acad Sci U S A; 2011 Dec; 108(49):E1293-301. PubMed ID: 22106262
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Direct coevolutionary couplings reflect biophysical residue interactions in proteins.
    Coucke A; Uguzzoni G; Oteri F; Cocco S; Monasson R; Weigt M
    J Chem Phys; 2016 Nov; 145(17):174102. PubMed ID: 27825220
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A PDB-wide, evolution-based assessment of protein-protein interfaces.
    Baskaran K; Duarte JM; Biyani N; Bliven S; Capitani G
    BMC Struct Biol; 2014 Oct; 14():22. PubMed ID: 25326082
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone.
    Rodriguez-Rivas J; Marsili S; Juan D; Valencia A
    Proc Natl Acad Sci U S A; 2016 Dec; 113(52):15018-15023. PubMed ID: 27965389
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Forecasting residue-residue contact prediction accuracy.
    Wozniak PP; Konopka BM; Xu J; Vriend G; Kotulska M
    Bioinformatics; 2017 Nov; 33(21):3405-3414. PubMed ID: 29036497
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Statistical investigations of protein residue direct couplings.
    Neuwald AF; Altschul SF
    PLoS Comput Biol; 2018 Dec; 14(12):e1006237. PubMed ID: 30596639
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes.
    Lua RC; Lichtarge O
    Bioinformatics; 2010 Dec; 26(23):2981-2. PubMed ID: 20929911
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins.
    Lua RC
    Bioinformatics; 2012 Aug; 28(15):2069-71. PubMed ID: 22611132
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein 3D structure computed from evolutionary sequence variation.
    Marks DS; Colwell LJ; Sheridan R; Hopf TA; Pagnani A; Zecchina R; Sander C
    PLoS One; 2011; 6(12):e28766. PubMed ID: 22163331
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting accurate contacts in thousands of Pfam domain families using PconsC3.
    Michel M; Skwark MJ; Menéndez Hurtado D; Ekeberg M; Elofsson A
    Bioinformatics; 2017 Sep; 33(18):2859-2866. PubMed ID: 28535189
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evol and ProDy for bridging protein sequence evolution and structural dynamics.
    Bakan A; Dutta A; Mao W; Liu Y; Chennubhotla C; Lezon TR; Bahar I
    Bioinformatics; 2014 Sep; 30(18):2681-3. PubMed ID: 24849577
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.
    Gueudré T; Baldassi C; Zamparo M; Weigt M; Pagnani A
    Proc Natl Acad Sci U S A; 2016 Oct; 113(43):12186-12191. PubMed ID: 27729520
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks.
    Liu Y; Palmedo P; Ye Q; Berger B; Peng J
    Cell Syst; 2018 Jan; 6(1):65-74.e3. PubMed ID: 29275173
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.