These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

404 related articles for article (PubMed ID: 30643257)

  • 1. Fast and accurate genomic analyses using genome graphs.
    Rakocevic G; Semenyuk V; Lee WP; Spencer J; Browning J; Johnson IJ; Arsenijevic V; Nadj J; Ghose K; Suciu MC; Ji SG; Demir G; Li L; Toptaş BÇ; Dolgoborodov A; Pollex B; Spulber I; Glotova I; Kómár P; Stachyra AL; Li Y; Popovic M; Källberg M; Jain A; Kural D
    Nat Genet; 2019 Feb; 51(2):354-362. PubMed ID: 30643257
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Calling known variants and identifying new variants while rapidly aligning sequence data.
    VanRaden PM; Bickhart DM; O'Connell JR
    J Dairy Sci; 2019 Apr; 102(4):3216-3229. PubMed ID: 30772032
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
    Edge P; Bansal V
    Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs.
    Younsi R; MacLean D
    Bioinformatics; 2015 Mar; 31(5):642-6. PubMed ID: 25344498
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fast alignment of reads to a variation graph with application to SNP detection.
    Monsu M; Comin M
    J Integr Bioinform; 2021 Nov; 18(4):. PubMed ID: 34783230
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis.
    Tetikol HS; Turgut D; Narci K; Budak G; Kalay O; Arslan E; Demirkaya-Budak S; Dolgoborodov A; Kabakci-Zorlu D; Semenyuk V; Jain A; Davis-Dusenbery BN
    Nat Commun; 2022 Aug; 13(1):4384. PubMed ID: 35927245
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Fast and SNP-aware short read alignment with SALT.
    Quan W; Liu B; Wang Y
    BMC Bioinformatics; 2021 Aug; 22(Suppl 9):172. PubMed ID: 34433415
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
    Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
    Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
    [TBL] [Abstract][Full Text] [Related]  

  • 9. iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.
    Mimori T; Nariai N; Kojima K; Takahashi M; Ono A; Sato Y; Yamaguchi-Kabata Y; Nagasaki M
    BMC Syst Biol; 2013; 7 Suppl 6(Suppl 6):S8. PubMed ID: 24564972
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Towards pan-genome read alignment to improve variation calling.
    Valenzuela D; Norri T; Välimäki N; Pitkänen E; Mäkinen V
    BMC Genomics; 2018 May; 19(Suppl 2):87. PubMed ID: 29764365
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
    Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D
    Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BOAT: Basic Oligonucleotide Alignment Tool.
    Zhao SQ; Wang J; Zhang L; Li JT; Gu X; Gao G; Wei L
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S2. PubMed ID: 19958483
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Indexing Graphs for Path Queries with Applications in Genome Research.
    Sirén J; Välimäki N; Mäkinen V
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):375-88. PubMed ID: 26355784
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ACMGA: a reference-free multiple-genome alignment pipeline for plant species.
    Zhou H; Su X; Song B
    BMC Genomics; 2024 May; 25(1):515. PubMed ID: 38796435
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The complete genome of an individual by massively parallel DNA sequencing.
    Wheeler DA; Srinivasan M; Egholm M; Shen Y; Chen L; McGuire A; He W; Chen YJ; Makhijani V; Roth GT; Gomes X; Tartaro K; Niazi F; Turcotte CL; Irzyk GP; Lupski JR; Chinault C; Song XZ; Liu Y; Yuan Y; Nazareth L; Qin X; Muzny DM; Margulies M; Weinstock GM; Gibbs RA; Rothberg JM
    Nature; 2008 Apr; 452(7189):872-6. PubMed ID: 18421352
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
    Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
    BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.
    Zeng F; Jiang R; Chen T
    Bioinformatics; 2013 Nov; 29(22):2859-68. PubMed ID: 23995392
    [TBL] [Abstract][Full Text] [Related]  

  • 18. FermiKit: assembly-based variant calling for Illumina resequencing data.
    Li H
    Bioinformatics; 2015 Nov; 31(22):3694-6. PubMed ID: 26220959
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast and sensitive mapping of nanopore sequencing reads with GraphMap.
    Sović I; Šikić M; Wilm A; Fenlon SN; Chen S; Nagarajan N
    Nat Commun; 2016 Apr; 7():11307. PubMed ID: 27079541
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Whole Genome Sequencing of the Mutamouse Model Reveals Strain- and Colony-Level Variation, and Genomic Features of the Transgene Integration Site.
    Meier MJ; Beal MA; Schoenrock A; Yauk CL; Marchetti F
    Sci Rep; 2019 Sep; 9(1):13775. PubMed ID: 31551502
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.