These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

187 related articles for article (PubMed ID: 30647073)

  • 1. Accurate Estimation of Context-Dependent False Discovery Rates in Top-Down Proteomics.
    LeDuc RD; Fellers RT; Early BP; Greer JB; Shams DP; Thomas PM; Kelleher NL
    Mol Cell Proteomics; 2019 Apr; 18(4):796-805. PubMed ID: 30647073
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.
    Dai Y; Buxton KE; Schaffer LV; Miller RM; Millikin RJ; Scalf M; Frey BL; Shortreed MR; Smith LM
    J Proteome Res; 2019 Oct; 18(10):3671-3680. PubMed ID: 31479276
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Precursor deconvolution error estimation: The missing puzzle piece in false discovery rate in top-down proteomics.
    Jeong K; Kaulich PT; Jung W; Kim J; Tholey A; Kohlbacher O
    Proteomics; 2024 Feb; 24(3-4):e2300068. PubMed ID: 37997224
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection.
    Tabb DL; Jeong K; Druart K; Gant MS; Brown KA; Nicora C; Zhou M; Couvillion S; Nakayasu E; Williams JE; Peterson HK; McGuire MK; McGuire MA; Metz TO; Chamot-Rooke J
    J Proteome Res; 2023 Jul; 22(7):2199-2217. PubMed ID: 37235544
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting Electrophoretic Mobility of Proteoforms for Large-Scale Top-Down Proteomics.
    Chen D; Lubeckyj RA; Yang Z; McCool EN; Shen X; Wang Q; Xu T; Sun L
    Anal Chem; 2020 Mar; 92(5):3503-3507. PubMed ID: 32043875
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics.
    Fornelli L; Srzentić K; Toby TK; Doubleday PF; Huguet R; Mullen C; Melani RD; Dos Santos Seckler H; DeHart CJ; Weisbrod CR; Durbin KR; Greer JB; Early BP; Fellers RT; Zabrouskov V; Thomas PM; Compton PD; Kelleher NL
    Mol Cell Proteomics; 2020 Feb; 19(2):405-420. PubMed ID: 31888965
    [TBL] [Abstract][Full Text] [Related]  

  • 7. False discovery rates in spectral identification.
    Jeong K; Kim S; Bandeira N
    BMC Bioinformatics; 2012; 13 Suppl 16(Suppl 16):S2. PubMed ID: 23176207
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data.
    Schaffer LV; Anderson LC; Butcher DS; Shortreed MR; Miller RM; Pavelec C; Smith LM
    J Proteome Res; 2021 Jan; 20(1):317-325. PubMed ID: 33074679
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
    Schaffer LV; Millikin RJ; Shortreed MR; Scalf M; Smith LM
    J Proteome Res; 2020 Aug; 19(8):3510-3517. PubMed ID: 32584579
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics.
    McCool EN; Lodge JM; Basharat AR; Liu X; Coon JJ; Sun L
    J Am Soc Mass Spectrom; 2019 Dec; 30(12):2470-2479. PubMed ID: 31073891
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High-throughput quantitative top-down proteomics.
    Cupp-Sutton KA; Wu S
    Mol Omics; 2020 Apr; 16(2):91-99. PubMed ID: 31932818
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families.
    Schaffer LV; Shortreed MR; Cesnik AJ; Frey BL; Solntsev SK; Scalf M; Smith LM
    Anal Chem; 2018 Jan; 90(2):1325-1333. PubMed ID: 29227670
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SPECTRUM - A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data.
    Basharat AR; Iman K; Khalid MF; Anwar Z; Hussain R; Kabir HG; Tahreem M; Shahid A; Humayun M; Hayat HA; Mustafa M; Shoaib MA; Ullah Z; Zarina S; Ahmed S; Uddin E; Hamera S; Ahmad F; Chaudhary SU
    Sci Rep; 2019 Aug; 9(1):11267. PubMed ID: 31375721
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy.
    Schaffer LV; Rensvold JW; Shortreed MR; Cesnik AJ; Jochem A; Scalf M; Frey BL; Pagliarini DJ; Smith LM
    J Proteome Res; 2018 Oct; 17(10):3526-3536. PubMed ID: 30180576
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics.
    Carr AV; Bollis NE; Pavek JG; Shortreed MR; Smith LM
    Proteomics; 2024 Apr; 24(8):e2300234. PubMed ID: 38487981
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top-Down Mass Spectrometry.
    Kou Q; Wu S; Liu X
    Proteomics; 2018 Feb; 18(3-4):. PubMed ID: 29327814
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Decoy methods for assessing false positives and false discovery rates in shotgun proteomics.
    Wang G; Wu WW; Zhang Z; Masilamani S; Shen RF
    Anal Chem; 2009 Jan; 81(1):146-59. PubMed ID: 19061407
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enhancing Top-Down Proteomics Data Analysis by Combining Deconvolution Results through a Machine Learning Strategy.
    McIlwain SJ; Wu Z; Wetzel M; Belongia D; Jin Y; Wenger K; Ong IM; Ge Y
    J Am Soc Mass Spectrom; 2020 May; 31(5):1104-1113. PubMed ID: 32223200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer.
    Fornelli L; Durbin KR; Fellers RT; Early BP; Greer JB; LeDuc RD; Compton PD; Kelleher NL
    J Proteome Res; 2017 Feb; 16(2):609-618. PubMed ID: 28152595
    [TBL] [Abstract][Full Text] [Related]  

  • 20. High sensitivity top-down proteomics captures single muscle cell heterogeneity in large proteoforms.
    Melby JA; Brown KA; Gregorich ZR; Roberts DS; Chapman EA; Ehlers LE; Gao Z; Larson EJ; Jin Y; Lopez JR; Hartung J; Zhu Y; McIlwain SJ; Wang D; Guo W; Diffee GM; Ge Y
    Proc Natl Acad Sci U S A; 2023 May; 120(19):e2222081120. PubMed ID: 37126723
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.