BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

181 related articles for article (PubMed ID: 30654736)

  • 1. Barcode identification for single cell genomics.
    Tambe A; Pachter L
    BMC Bioinformatics; 2019 Jan; 20(1):32. PubMed ID: 30654736
    [TBL] [Abstract][Full Text] [Related]  

  • 2. TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix.
    Yoon S; Kim D; Kang K; Park WJ
    BMC Genomics; 2018 Sep; 19(1):653. PubMed ID: 30180798
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
    Galanti L; Shasha D; Gunsalus KC
    BMC Bioinformatics; 2021 Jul; 22(1):359. PubMed ID: 34215187
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Insertion and deletion correcting DNA barcodes based on watermarks.
    Kracht D; Schober S
    BMC Bioinformatics; 2015 Feb; 16():50. PubMed ID: 25887410
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assembly of long error-prone reads using de Bruijn graphs.
    Lin Y; Yuan J; Kolmogorov M; Shen MW; Chaisson M; Pevzner PA
    Proc Natl Acad Sci U S A; 2016 Dec; 113(52):E8396-E8405. PubMed ID: 27956617
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Levenshtein error-correcting barcodes for multiplexed DNA sequencing.
    Buschmann T; Bystrykh LV
    BMC Bioinformatics; 2013 Sep; 14():272. PubMed ID: 24021088
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Compact representation of k-mer de Bruijn graphs for genome read assembly.
    Rødland EA
    BMC Bioinformatics; 2013 Oct; 14():313. PubMed ID: 24152242
    [TBL] [Abstract][Full Text] [Related]  

  • 8. INC-Seq: accurate single molecule reads using nanopore sequencing.
    Li C; Chng KR; Boey EJ; Ng AH; Wilm A; Nagarajan N
    Gigascience; 2016 Aug; 5(1):34. PubMed ID: 27485345
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integrating long-range connectivity information into de Bruijn graphs.
    Turner I; Garimella KV; Iqbal Z; McVean G
    Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sequencing barcode construction and identification methods based on block error-correction codes.
    Chen W; Wang L; Han M; Han C; Li B
    Sci China Life Sci; 2020 Oct; 63(10):1580-1592. PubMed ID: 32303959
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Indel-correcting DNA barcodes for high-throughput sequencing.
    Hawkins JA; Jones SK; Finkelstein IJ; Press WH
    Proc Natl Acad Sci U S A; 2018 Jul; 115(27):E6217-E6226. PubMed ID: 29925596
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Squeakr: an exact and approximate k-mer counting system.
    Pandey P; Bender MA; Johnson R; Patro R; Berger B
    Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes.
    Johnson MS; Venkataram S; Kryazhimskiy S
    J Mol Evol; 2023 Jun; 91(3):263-280. PubMed ID: 36651964
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Enhancing the detection of barcoded reads in high throughput DNA sequencing data by controlling the false discovery rate.
    Buschmann T; Zhang R; Brash DE; Bystrykh LV
    BMC Bioinformatics; 2014 Aug; 15(1):264. PubMed ID: 25099007
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Designing robust watermark barcodes for multiplex long-read sequencing.
    Ezpeleta J; Krsticevic FJ; Bulacio P; Tapia E
    Bioinformatics; 2017 Mar; 33(6):807-813. PubMed ID: 27259539
    [TBL] [Abstract][Full Text] [Related]  

  • 16. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Shepherd: accurate clustering for correcting DNA barcode errors.
    Tavakolian N; Frazão JG; Bendixsen D; Stelkens R; Li CB
    Bioinformatics; 2022 Aug; 38(15):3710-3716. PubMed ID: 35708611
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SAKE: Strobemer-assisted k-mer extraction.
    Leinonen M; Salmela L
    PLoS One; 2023; 18(11):e0294415. PubMed ID: 38019768
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RResolver: efficient short-read repeat resolution within ABySS.
    Nikolić V; Afshinfard A; Chu J; Wong J; Coombe L; Nip KM; Warren RL; Birol I
    BMC Bioinformatics; 2022 Jun; 23(1):246. PubMed ID: 35729491
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
    Limasset A; Flot JF; Peterlongo P
    Bioinformatics; 2020 Mar; 36(5):1374-1381. PubMed ID: 30785192
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.