190 related articles for article (PubMed ID: 30679562)
1. High Quality ATAC-Seq Data Recovered from Cryopreserved Breast Cell Lines and Tissue.
Fujiwara S; Baek S; Varticovski L; Kim S; Hager GL
Sci Rep; 2019 Jan; 9(1):516. PubMed ID: 30679562
[TBL] [Abstract][Full Text] [Related]
2. Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.
Halstead MM; Kern C; Saelao P; Chanthavixay G; Wang Y; Delany ME; Zhou H; Ross PJ
Sci Rep; 2020 Mar; 10(1):5230. PubMed ID: 32251359
[TBL] [Abstract][Full Text] [Related]
3. An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.
Bera BS; Thompson TV; Sosa E; Nomaru H; Reynolds D; Dubin RA; Maqbool SB; Zheng D; Morrow BE; Greally JM; Suzuki M
Epigenetics Chromatin; 2023 Apr; 16(1):14. PubMed ID: 37118773
[TBL] [Abstract][Full Text] [Related]
4. Single-Nucleus ATAC-seq for Mapping Chromatin Accessibility in Individual Cells of Murine Hearts.
Yekelchyk M; Li X; Guenther S; Braun T
Methods Mol Biol; 2024; 2752():245-257. PubMed ID: 38194039
[TBL] [Abstract][Full Text] [Related]
5. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
Marinov GK; Shipony Z
Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
[TBL] [Abstract][Full Text] [Related]
6. Chromatin Accessibility Profiling and Data Analysis Using ATAC-seq in
Reeves GA; Singh PP; Brunet A
Cold Spring Harb Protoc; 2024 Mar; 2024(3):107747. PubMed ID: 37100469
[TBL] [Abstract][Full Text] [Related]
7. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
8. Parallel recovery of chromatin accessibility and gene expression dynamics from frozen human regulatory T cells.
Wong YY; Harbison JE; Hope CM; Gundsambuu B; Brown KA; Wong SW; Brown CY; Couper JJ; Breen J; Liu N; Pederson SM; Köhne M; Klee K; Schultze J; Beyer M; Sadlon T; Barry SC
Sci Rep; 2023 Apr; 13(1):5506. PubMed ID: 37016052
[TBL] [Abstract][Full Text] [Related]
9. Adipocyte-Specific ATAC-Seq with Adipose Tissues Using Fluorescence-Activated Nucleus Sorting.
Kim K; Taleb S; So J; Wann J; Cheol Roh H
J Vis Exp; 2023 Mar; (193):. PubMed ID: 37010301
[TBL] [Abstract][Full Text] [Related]
10. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation.
Reske JJ; Wilson MR; Chandler RL
Epigenetics Chromatin; 2020 Apr; 13(1):22. PubMed ID: 32321567
[TBL] [Abstract][Full Text] [Related]
11. XL-DNase-seq: improved footprinting of dynamic transcription factors.
Oh KS; Ha J; Baek S; Sung MH
Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
[TBL] [Abstract][Full Text] [Related]
12. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
Bajic M; Maher KA; Deal RB
Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
[TBL] [Abstract][Full Text] [Related]
13. An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Liu C; Wang M; Wei X; Wu L; Xu J; Dai X; Xia J; Cheng M; Yuan Y; Zhang P; Li J; Feng T; Chen A; Zhang W; Chen F; Shang Z; Zhang X; Peters BA; Liu L
Sci Data; 2019 May; 6(1):65. PubMed ID: 31110271
[TBL] [Abstract][Full Text] [Related]
14. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Yan F; Powell DR; Curtis DJ; Wong NC
Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
[TBL] [Abstract][Full Text] [Related]
15. Cell type-specific chromatin accessibility analysis in the mouse and human brain.
Rocks D; Jaric I; Tesfa L; Greally JM; Suzuki M; Kundakovic M
Epigenetics; 2022; 17(2):202-219. PubMed ID: 33775205
[TBL] [Abstract][Full Text] [Related]
16. Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei.
Zhang H; Rice ME; Alvin JW; Farrera-Gaffney D; Galligan JJ; Johnson MDL; Cusanovich DA
BMC Genomics; 2022 Mar; 23(1):214. PubMed ID: 35296236
[TBL] [Abstract][Full Text] [Related]
17. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
[TBL] [Abstract][Full Text] [Related]
18. FACS-based isolation of fixed mouse neuronal nuclei for ATAC-seq and Hi-C.
Eremenko E; Golova A; Stein D; Einav M; Khrameeva E; Toiber D
STAR Protoc; 2021 Sep; 2(3):100643. PubMed ID: 34308377
[TBL] [Abstract][Full Text] [Related]
19. Chromatin Accessibility Analysis from Fresh and Cryopreserved Human Ovarian Follicles.
Shannon J; Sundaresan A; Bukulmez O; Jiao Z; Doody K; Capelouto S; Carr B; Banaszynski LA
Mol Hum Reprod; 2022 Jun; ():. PubMed ID: 35674368
[TBL] [Abstract][Full Text] [Related]
20. Mapping Chromatin Accessibility in Human Naïve Pluripotent Stem Cells Using ATAC-Seq.
Cinkornpumin JK; Hossain I; Pastor WA
Methods Mol Biol; 2022; 2416():201-211. PubMed ID: 34870838
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]