These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 30689725)

  • 21. nPhase: an accurate and contiguous phasing method for polyploids.
    Abou Saada O; Tsouris A; Eberlein C; Friedrich A; Schacherer J
    Genome Biol; 2021 Apr; 22(1):126. PubMed ID: 33926549
    [TBL] [Abstract][Full Text] [Related]  

  • 22. GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
    Tangherloni A; Spolaor S; Rundo L; Nobile MS; Cazzaniga P; Mauri G; Liò P; Merelli I; Besozzi D
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):172. PubMed ID: 30999845
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 24. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments.
    Bansal V
    Bioinformatics; 2018 Jan; 34(1):155-162. PubMed ID: 29036419
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar.
    Sun H; Jiao WB; Krause K; Campoy JA; Goel M; Folz-Donahue K; Kukat C; Huettel B; Schneeberger K
    Nat Genet; 2022 Mar; 54(3):342-348. PubMed ID: 35241824
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Overlap graph-based generation of haplotigs for diploids and polyploids.
    Baaijens JA; Schönhuth A
    Bioinformatics; 2019 Nov; 35(21):4281-4289. PubMed ID: 30994902
    [TBL] [Abstract][Full Text] [Related]  

  • 27. HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
    Beretta S; Patterson MD; Zaccaria S; Della Vedova G; Bonizzoni P
    BMC Bioinformatics; 2018 Jul; 19(1):252. PubMed ID: 29970002
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Better ILP models for haplotype assembly.
    Etemadi M; Bagherian M; Chen ZZ; Wang L
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):52. PubMed ID: 29504891
    [TBL] [Abstract][Full Text] [Related]  

  • 29. HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.
    Cai D; Shang J; Sun Y
    Bioinformatics; 2022 Dec; 38(24):5360-5367. PubMed ID: 36308467
    [TBL] [Abstract][Full Text] [Related]  

  • 30. CoLoRMap: Correcting Long Reads by Mapping short reads.
    Haghshenas E; Hach F; Sahinalp SC; Chauve C
    Bioinformatics; 2016 Sep; 32(17):i545-i551. PubMed ID: 27587673
    [TBL] [Abstract][Full Text] [Related]  

  • 31. MixSIH: a mixture model for single individual haplotyping.
    Matsumoto H; Kiryu H
    BMC Genomics; 2013; 14 Suppl 2(Suppl 2):S5. PubMed ID: 23445519
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SHEsisPlus, a toolset for genetic studies on polyploid species.
    Shen J; Li Z; Chen J; Song Z; Zhou Z; Shi Y
    Sci Rep; 2016 Apr; 6():24095. PubMed ID: 27048905
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Unfazed: parent-of-origin detection for large and small de novo variants.
    Belyeu JR; Sasani TA; Pedersen BS; Quinlan AR
    Bioinformatics; 2021 Dec; 37(24):4860-4861. PubMed ID: 34146087
    [TBL] [Abstract][Full Text] [Related]  

  • 34. De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding.
    Chen J; Zhao Y; Sun Y
    Bioinformatics; 2018 Sep; 34(17):2927-2935. PubMed ID: 29617936
    [TBL] [Abstract][Full Text] [Related]  

  • 35. VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing.
    Bolognini D; Sanders A; Korbel JO; Magi A; Benes V; Rausch T
    Bioinformatics; 2020 Feb; 36(4):1267-1269. PubMed ID: 31589307
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations.
    Zhou C; Olukolu B; Gemenet DC; Wu S; Gruneberg W; Cao MD; Fei Z; Zeng ZB; George AW; Khan A; Yencho GC; Coin LJM
    Nat Genet; 2020 Nov; 52(11):1256-1264. PubMed ID: 33128049
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
    Bansal V
    Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
    [TBL] [Abstract][Full Text] [Related]  

  • 38. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences.
    Fruzangohar M; Timmins WA; Kravchuk O; Taylor J
    Gigascience; 2022 May; 11():. PubMed ID: 35579550
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Haplotype phasing in single-cell DNA-sequencing data.
    Satas G; Raphael BJ
    Bioinformatics; 2018 Jul; 34(13):i211-i217. PubMed ID: 29950014
    [TBL] [Abstract][Full Text] [Related]  

  • 40. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
    Huang S; Kang M; Xu A
    Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.