258 related articles for article (PubMed ID: 30698743)
1. Insight into novel RNA-binding activities via large-scale analysis of lncRNA-bound proteome and IDH1-bound transcriptome.
Liu L; Li T; Song G; He Q; Yin Y; Lu JY; Bi X; Wang K; Luo S; Chen YS; Yang Y; Sun BF; Yang YG; Wu J; Zhu H; Shen X
Nucleic Acids Res; 2019 Mar; 47(5):2244-2262. PubMed ID: 30698743
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of Post-transcriptional Gene Regulation in Pancreatic Cancer Cells: Studying RNA Binding Proteins and Their mRNA Targets.
Jain A; Brown SZ; Thomsett HL; Londin E; Brody JR
Methods Mol Biol; 2019; 1882():239-252. PubMed ID: 30378060
[TBL] [Abstract][Full Text] [Related]
3. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
4. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
5. Transcriptome-Wide Mapping of Protein-RNA Interactions.
Bi X; Shen X
Methods Mol Biol; 2020; 2161():161-173. PubMed ID: 32681512
[TBL] [Abstract][Full Text] [Related]
6. Transcriptome-wide identification of in vivo interactions between RNAs and RNA-binding proteins by RIP and PAR-CLIP assays.
González-Buendía E; Saldaña-Meyer R; Meier K; Recillas-Targa F
Methods Mol Biol; 2015; 1288():413-28. PubMed ID: 25827894
[TBL] [Abstract][Full Text] [Related]
7. Proximity-CLIP Provides a Snapshot of Protein-Occupied RNA Elements at Subcellular Resolution and Transcriptome-Wide Scale.
Benhalevy D; Hafner M
Methods Mol Biol; 2020; 2166():283-305. PubMed ID: 32710416
[TBL] [Abstract][Full Text] [Related]
8. Uncovering the RNA-binding protein landscape in the pluripotency network of human embryonic stem cells.
Dvir S; Argoetti A; Lesnik C; Roytblat M; Shriki K; Amit M; Hashimshony T; Mandel-Gutfreund Y
Cell Rep; 2021 Jun; 35(9):109198. PubMed ID: 34077720
[TBL] [Abstract][Full Text] [Related]
9. IDH1 fine-tunes cap-dependent translation initiation.
Liu L; Lu JY; Li F; Xing X; Li T; Yang X; Shen X
J Mol Cell Biol; 2019 Oct; 11(10):816-828. PubMed ID: 31408165
[TBL] [Abstract][Full Text] [Related]
10. A large-scale binding and functional map of human RNA-binding proteins.
Van Nostrand EL; Freese P; Pratt GA; Wang X; Wei X; Xiao R; Blue SM; Chen JY; Cody NAL; Dominguez D; Olson S; Sundararaman B; Zhan L; Bazile C; Bouvrette LPB; Bergalet J; Duff MO; Garcia KE; Gelboin-Burkhart C; Hochman M; Lambert NJ; Li H; McGurk MP; Nguyen TB; Palden T; Rabano I; Sathe S; Stanton R; Su A; Wang R; Yee BA; Zhou B; Louie AL; Aigner S; Fu XD; Lécuyer E; Burge CB; Graveley BR; Yeo GW
Nature; 2020 Jul; 583(7818):711-719. PubMed ID: 32728246
[TBL] [Abstract][Full Text] [Related]
11. In vivo and transcriptome-wide identification of RNA binding protein target sites.
Jungkamp AC; Stoeckius M; Mecenas D; Grün D; Mastrobuoni G; Kempa S; Rajewsky N
Mol Cell; 2011 Dec; 44(5):828-40. PubMed ID: 22152485
[TBL] [Abstract][Full Text] [Related]
12. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
13. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand EL; Pratt GA; Yee BA; Wheeler EC; Blue SM; Mueller J; Park SS; Garcia KE; Gelboin-Burkhart C; Nguyen TB; Rabano I; Stanton R; Sundararaman B; Wang R; Fu XD; Graveley BR; Yeo GW
Genome Biol; 2020 Apr; 21(1):90. PubMed ID: 32252787
[TBL] [Abstract][Full Text] [Related]
14. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
15. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
16. Analysis of lncRNA-Protein Interactions by RNA-Protein Pull-Down Assays and RNA Immunoprecipitation (RIP).
Bierhoff H
Methods Mol Biol; 2018; 1686():241-250. PubMed ID: 29030825
[TBL] [Abstract][Full Text] [Related]
17. Chromatin-contact atlas reveals disorder-mediated protein interactions and moonlighting chromatin-associated RBPs.
Rafiee MR; Zagalak JA; Sidorov S; Steinhauser S; Davey K; Ule J; Luscombe NM
Nucleic Acids Res; 2021 Dec; 49(22):13092-13107. PubMed ID: 34871434
[TBL] [Abstract][Full Text] [Related]
18. Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae.
Freeberg MA; Han T; Moresco JJ; Kong A; Yang YC; Lu ZJ; Yates JR; Kim JK
Genome Biol; 2013 Feb; 14(2):R13. PubMed ID: 23409723
[TBL] [Abstract][Full Text] [Related]
19. High-resolution profiling of protein occupancy on polyadenylated RNA transcripts.
Munschauer M; Schueler M; Dieterich C; Landthaler M
Methods; 2014 Feb; 65(3):302-9. PubMed ID: 24096003
[TBL] [Abstract][Full Text] [Related]
20. A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation.
Ren Y; Huo Y; Li W; He M; Liu S; Yang J; Zhao H; Xu L; Guo Y; Si Y; Zhao H; Rao S; Wang J; Ma Y; Wang X; Yu J; Wang F
Genome Biol; 2021 Oct; 22(1):290. PubMed ID: 34649616
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
