255 related articles for article (PubMed ID: 30709849)
1. Chromatin architecture reorganization during neuronal cell differentiation in
Chathoth KT; Zabet NR
Genome Res; 2019 Apr; 29(4):613-625. PubMed ID: 30709849
[TBL] [Abstract][Full Text] [Related]
2. Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells.
Wang Q; Sun Q; Czajkowsky DM; Shao Z
Nat Commun; 2018 Jan; 9(1):188. PubMed ID: 29335463
[TBL] [Abstract][Full Text] [Related]
3. High-resolution TADs reveal DNA sequences underlying genome organization in flies.
Ramírez F; Bhardwaj V; Arrigoni L; Lam KC; Grüning BA; Villaveces J; Habermann B; Akhtar A; Manke T
Nat Commun; 2018 Jan; 9(1):189. PubMed ID: 29335486
[TBL] [Abstract][Full Text] [Related]
4. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
Ulianov SV; Khrameeva EE; Gavrilov AA; Flyamer IM; Kos P; Mikhaleva EA; Penin AA; Logacheva MD; Imakaev MV; Chertovich A; Gelfand MS; Shevelyov YY; Razin SV
Genome Res; 2016 Jan; 26(1):70-84. PubMed ID: 26518482
[TBL] [Abstract][Full Text] [Related]
5. Chromatin Architecture in the Fly: Living without CTCF/Cohesin Loop Extrusion?: Alternating Chromatin States Provide a Basis for Domain Architecture in Drosophila.
Matthews NE; White R
Bioessays; 2019 Sep; 41(9):e1900048. PubMed ID: 31264253
[TBL] [Abstract][Full Text] [Related]
6. Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
Luzhin AV; Flyamer IM; Khrameeva EE; Ulianov SV; Razin SV; Gavrilov AA
J Cell Biochem; 2019 Mar; 120(3):4494-4503. PubMed ID: 30260021
[TBL] [Abstract][Full Text] [Related]
7. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
[TBL] [Abstract][Full Text] [Related]
8. 4C-seq characterization of Drosophila BEAF binding regions provides evidence for highly variable long-distance interactions between active chromatin.
Shrestha S; Oh DH; McKowen JK; Dassanayake M; Hart CM
PLoS One; 2018; 13(9):e0203843. PubMed ID: 30248133
[TBL] [Abstract][Full Text] [Related]
9. Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription.
Hug CB; Grimaldi AG; Kruse K; Vaquerizas JM
Cell; 2017 Apr; 169(2):216-228.e19. PubMed ID: 28388407
[TBL] [Abstract][Full Text] [Related]
10. Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains.
Van Bortle K; Ramos E; Takenaka N; Yang J; Wahi JE; Corces VG
Genome Res; 2012 Nov; 22(11):2176-87. PubMed ID: 22722341
[TBL] [Abstract][Full Text] [Related]
11. Transcription-coupled structural dynamics of topologically associating domains regulate replication origin efficiency.
Li Y; Xue B; Zhang M; Zhang L; Hou Y; Qin Y; Long H; Su QP; Wang Y; Guan X; Jin Y; Cao Y; Li G; Sun Y
Genome Biol; 2021 Jul; 22(1):206. PubMed ID: 34253239
[TBL] [Abstract][Full Text] [Related]
12. Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
Cubeñas-Potts C; Rowley MJ; Lyu X; Li G; Lei EP; Corces VG
Nucleic Acids Res; 2017 Feb; 45(4):1714-1730. PubMed ID: 27899590
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila.
Lim SJ; Boyle PJ; Chinen M; Dale RK; Lei EP
Nucleic Acids Res; 2013 Mar; 41(5):2963-80. PubMed ID: 23358822
[TBL] [Abstract][Full Text] [Related]
14. Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
Rowley MJ; Nichols MH; Lyu X; Ando-Kuri M; Rivera ISM; Hermetz K; Wang P; Ruan Y; Corces VG
Mol Cell; 2017 Sep; 67(5):837-852.e7. PubMed ID: 28826674
[TBL] [Abstract][Full Text] [Related]
15. Insulator function and topological domain border strength scale with architectural protein occupancy.
Van Bortle K; Nichols MH; Li L; Ong CT; Takenaka N; Qin ZS; Corces VG
Genome Biol; 2014 Jun; 15(6):R82. PubMed ID: 24981874
[TBL] [Abstract][Full Text] [Related]
16. Topologically Associating Domains: An invariant framework or a dynamic scaffold?
Cubeñas-Potts C; Corces VG
Nucleus; 2015; 6(6):430-4. PubMed ID: 26418477
[TBL] [Abstract][Full Text] [Related]
17. A subset of topologically associating domains fold into mesoscale core-periphery networks.
Huang H; Chen ST; Titus KR; Emerson DJ; Bassett DS; Phillips-Cremins JE
Sci Rep; 2019 Jul; 9(1):9526. PubMed ID: 31266973
[TBL] [Abstract][Full Text] [Related]
18. A possible role of Drosophila CTCF in mitotic bookmarking and maintaining chromatin domains during the cell cycle.
Shen W; Wang D; Ye B; Shi M; Zhang Y; Zhao Z
Biol Res; 2015 May; 48(1):27. PubMed ID: 26013116
[TBL] [Abstract][Full Text] [Related]
19. TAD-free analysis of architectural proteins and insulators.
Mourad R; Cuvier O
Nucleic Acids Res; 2018 Mar; 46(5):e27. PubMed ID: 29272504
[TBL] [Abstract][Full Text] [Related]
20. Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing.
Li L; Lyu X; Hou C; Takenaka N; Nguyen HQ; Ong CT; Cubeñas-Potts C; Hu M; Lei EP; Bosco G; Qin ZS; Corces VG
Mol Cell; 2015 Apr; 58(2):216-31. PubMed ID: 25818644
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]