These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
128 related articles for article (PubMed ID: 30711455)
1. A neutral evolution test derived from a theoretical amino acid substitution model. Zamudio GS; Prosdocimi F; de Farias ST; José MV J Theor Biol; 2019 Apr; 467():31-38. PubMed ID: 30711455 [TBL] [Abstract][Full Text] [Related]
2. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation. Wang HC; Susko E; Roger AJ Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033 [TBL] [Abstract][Full Text] [Related]
3. Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code. Brooks DJ; Fresco JR; Lesk AM; Singh M Mol Biol Evol; 2002 Oct; 19(10):1645-55. PubMed ID: 12270892 [TBL] [Abstract][Full Text] [Related]
4. Structural calibration of the rates of amino acid evolution in a search for Darwin in drifting biological systems. Toft C; Fares MA Mol Biol Evol; 2010 Oct; 27(10):2375-85. PubMed ID: 20466746 [TBL] [Abstract][Full Text] [Related]
6. Near-neutrality in evolution of genes and gene regulation. Ohta T Proc Natl Acad Sci U S A; 2002 Dec; 99(25):16134-7. PubMed ID: 12461171 [TBL] [Abstract][Full Text] [Related]
7. Extensive parallelism in protein evolution. Bazykin GA; Kondrashov FA; Brudno M; Poliakov A; Dubchak I; Kondrashov AS Biol Direct; 2007 Aug; 2():20. PubMed ID: 17705846 [TBL] [Abstract][Full Text] [Related]
8. Multiplicity of phenotypes and RNA evolution. Rezazadegan R; Barrett C; Reidys C J Theor Biol; 2018 Jun; 447():139-146. PubMed ID: 29567324 [TBL] [Abstract][Full Text] [Related]
9. Theoretical foundation to estimate the relative efficiencies of the Jukes-Cantor+gamma model and the Jukes-Cantor model in obtaining the correct phylogenetic tree. Som A Gene; 2006 Dec; 385():103-10. PubMed ID: 16979305 [TBL] [Abstract][Full Text] [Related]
10. SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage. Pouyet F; Bailly-Bechet M; Mouchiroud D; Guéguen L Genome Biol Evol; 2016 Aug; 8(8):2427-41. PubMed ID: 27401173 [TBL] [Abstract][Full Text] [Related]
11. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank. Bastolla U; Porto M; Roman HE; Vendruscolo M BMC Evol Biol; 2006 May; 6():43. PubMed ID: 16737532 [TBL] [Abstract][Full Text] [Related]
12. Apparent trends of amino Acid gain and loss in protein evolution due to nearly neutral variation. McDonald JH Mol Biol Evol; 2006 Feb; 23(2):240-4. PubMed ID: 16195487 [TBL] [Abstract][Full Text] [Related]
13. Role of random genetic drift in the evolution of interactive systems. Ohta T J Mol Evol; 1997; 44 Suppl 1():S9-14. PubMed ID: 9091634 [TBL] [Abstract][Full Text] [Related]
14. Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations? Zou Z; Zhang J Mol Biol Evol; 2015 Aug; 32(8):2085-96. PubMed ID: 25862140 [TBL] [Abstract][Full Text] [Related]
15. Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations. Matsumoto T; John A; Baeza-Centurion P; Li B; Akashi H Mol Biol Evol; 2016 Jun; 33(6):1580-9. PubMed ID: 26873577 [TBL] [Abstract][Full Text] [Related]
16. On theoretical models of gene expression evolution with random genetic drift and natural selection. Ogasawara O; Okubo K PLoS One; 2009 Nov; 4(11):e7943. PubMed ID: 19936214 [TBL] [Abstract][Full Text] [Related]
18. Statistical properties of neutral evolution. Bastolla U; Porto M; Roman HE; Vendruscolo M J Mol Evol; 2003; 57 Suppl 1():S103-19. PubMed ID: 15008407 [TBL] [Abstract][Full Text] [Related]
19. Epistatic contributions promote the unification of incompatible models of neutral molecular evolution. de la Paz JA; Nartey CM; Yuvaraj M; Morcos F Proc Natl Acad Sci U S A; 2020 Mar; 117(11):5873-5882. PubMed ID: 32123092 [TBL] [Abstract][Full Text] [Related]
20. A thermodynamic model of protein structure evolution explains empirical amino acid substitution matrices. Norn C; André I; Theobald DL Protein Sci; 2021 Oct; 30(10):2057-2068. PubMed ID: 34218472 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]