BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

354 related articles for article (PubMed ID: 30720800)

  • 1. The effect of 16S rRNA region choice on bacterial community metabarcoding results.
    Bukin YS; Galachyants YP; Morozov IV; Bukin SV; Zakharenko AS; Zemskaya TI
    Sci Data; 2019 Feb; 6():190007. PubMed ID: 30720800
    [TBL] [Abstract][Full Text] [Related]  

  • 2. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
    Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
    BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms.
    Derakhshani H; Tun HM; Khafipour E
    J Basic Microbiol; 2016 Mar; 56(3):321-6. PubMed ID: 26426811
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard.
    Zemb O; Achard CS; Hamelin J; De Almeida ML; Gabinaud B; Cauquil L; Verschuren LMG; Godon JJ
    Microbiologyopen; 2020 Mar; 9(3):e977. PubMed ID: 31927795
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
    Myer PR; Kim M; Freetly HC; Smith TPL
    J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
    Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
    BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples.
    Barb JJ; Oler AJ; Kim HS; Chalmers N; Wallen GR; Cashion A; Munson PJ; Ames NJ
    PLoS One; 2016; 11(2):e0148047. PubMed ID: 26829716
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.
    Allen HK; Bayles DO; Looft T; Trachsel J; Bass BE; Alt DP; Bearson SM; Nicholson T; Casey TA
    BMC Res Notes; 2016 Aug; 9():380. PubMed ID: 27485508
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
    Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
    Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
    BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Determining the most accurate 16S rRNA hypervariable region for taxonomic identification from respiratory samples.
    López-Aladid R; Fernández-Barat L; Alcaraz-Serrano V; Bueno-Freire L; Vázquez N; Pastor-Ibáñez R; Palomeque A; Oscanoa P; Torres A
    Sci Rep; 2023 Mar; 13(1):3974. PubMed ID: 36894603
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons.
    Djemiel C; Dequiedt S; Karimi B; Cottin A; Girier T; El Djoudi Y; Wincker P; Lelièvre M; Mondy S; Chemidlin Prévost-Bouré N; Maron PA; Ranjard L; Terrat S
    BMC Bioinformatics; 2020 Oct; 21(1):492. PubMed ID: 33129268
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
    Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
    Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
    Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
    PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
    [TBL] [Abstract][Full Text] [Related]  

  • 15. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
    Mysara M; Njima M; Leys N; Raes J; Monsieurs P
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 17. [Analysis of the dynamic changes in gut microbiota in patients with extremely severe burns by 16S ribosomal RNA high-throughput sequencing technology].
    Pan YY; Fan YF; Li JL; Cui SY; Huang N; Jin GY; Chen C; Zhang C
    Zhonghua Shao Shang Za Zhi; 2020 Dec; 36(12):1159-1166. PubMed ID: 33379852
    [No Abstract]   [Full Text] [Related]  

  • 18. Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo.
    Drinkwater R; Schnell IB; Bohmann K; Bernard H; Veron G; Clare E; Gilbert MTP; Rossiter SJ
    Mol Ecol Resour; 2019 Jan; 19(1):105-117. PubMed ID: 30225935
    [TBL] [Abstract][Full Text] [Related]  

  • 19. In Silico and Experimental Evaluation of Primer Sets for Species-Level Resolution of the Vaginal Microbiota Using 16S Ribosomal RNA Gene Sequencing.
    Van Der Pol WJ; Kumar R; Morrow CD; Blanchard EE; Taylor CM; Martin DH; Lefkowitz EJ; Muzny CA
    J Infect Dis; 2019 Jan; 219(2):305-314. PubMed ID: 30535155
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
    Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
    Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.