BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

126 related articles for article (PubMed ID: 30759194)

  • 21. Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB.
    Lagerstedt I; Moore WJ; Patwardhan A; Sanz-García E; Best C; Swedlow JR; Kleywegt GJ
    J Struct Biol; 2013 Nov; 184(2):173-81. PubMed ID: 24113529
    [TBL] [Abstract][Full Text] [Related]  

  • 22. EMDataBank.org: unified data resource for CryoEM.
    Lawson CL; Baker ML; Best C; Bi C; Dougherty M; Feng P; van Ginkel G; Devkota B; Lagerstedt I; Ludtke SJ; Newman RH; Oldfield TJ; Rees I; Sahni G; Sala R; Velankar S; Warren J; Westbrook JD; Henrick K; Kleywegt GJ; Berman HM; Chiu W
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D456-64. PubMed ID: 20935055
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences.
    Faezov B; Dunbrack RL
    PLoS One; 2021; 16(7):e0253411. PubMed ID: 34228733
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Unified data resource for cryo-EM.
    Lawson CL
    Methods Enzymol; 2010; 483():73-90. PubMed ID: 20888470
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
    Prlic A; Kalro T; Bhattacharya R; Christie C; Burley SK; Rose PW
    Bioinformatics; 2016 Dec; 32(24):3833-3835. PubMed ID: 27551105
    [TBL] [Abstract][Full Text] [Related]  

  • 26. RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.
    Bittrich S; Rose Y; Segura J; Lowe R; Westbrook JD; Duarte JM; Burley SK
    Bioinformatics; 2022 Feb; 38(5):1452-1454. PubMed ID: 34864908
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Lemon: a framework for rapidly mining structural information from the Protein Data Bank.
    Fine J; Chopra G
    Bioinformatics; 2019 Oct; 35(20):4165-4167. PubMed ID: 30873531
    [TBL] [Abstract][Full Text] [Related]  

  • 28. atomium-a Python structure parser.
    Ireland SM; Martin ACR
    Bioinformatics; 2020 May; 36(9):2750-2754. PubMed ID: 32044951
    [TBL] [Abstract][Full Text] [Related]  

  • 29. The future of the Protein Data Bank.
    Berman HM; Kleywegt GJ; Nakamura H; Markley JL
    Biopolymers; 2013 Mar; 99(3):218-22. PubMed ID: 23023942
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Bioinformatics Tools and Resources for Analyzing Protein Structures.
    Paxman JJ; Heras B
    Methods Mol Biol; 2017; 1549():209-220. PubMed ID: 27975294
    [TBL] [Abstract][Full Text] [Related]  

  • 31. RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.
    Bittrich S; Bhikadiya C; Bi C; Chao H; Duarte JM; Dutta S; Fayazi M; Henry J; Khokhriakov I; Lowe R; Piehl DW; Segura J; Vallat B; Voigt M; Westbrook JD; Burley SK; Rose Y
    J Mol Biol; 2023 Jul; 435(14):167994. PubMed ID: 36738985
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank.
    Park SJ; Lee J; Patel DS; Ma H; Lee HS; Jo S; Im W
    Bioinformatics; 2017 Oct; 33(19):3051-3057. PubMed ID: 28582506
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Vivaldi: visualization and validation of biomacromolecular NMR structures from the PDB.
    Hendrickx PM; Gutmanas A; Kleywegt GJ
    Proteins; 2013 Apr; 81(4):583-91. PubMed ID: 23180575
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PDB_Amyloid: an extended live amyloid structure list from the PDB.
    Takács K; Varga B; Grolmusz V
    FEBS Open Bio; 2019 Jan; 9(1):185-190. PubMed ID: 30652085
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Fifty years of Protein Data Bank in the Journal of Biochemistry.
    Kurisu G
    J Biochem; 2022 Jan; 171(1):3-11. PubMed ID: 34865074
    [TBL] [Abstract][Full Text] [Related]  

  • 36. ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.
    Porter KA; Xia B; Beglov D; Bohnuud T; Alam N; Schueler-Furman O; Kozakov D
    Bioinformatics; 2017 Oct; 33(20):3299-3301. PubMed ID: 28430871
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Visualization and Analysis of Protein Structures with LiteMol Suite.
    Sehnal D; Svobodová R; Berka K; Pravda L; Midlik A; Koča J
    Methods Mol Biol; 2020; 2112():1-13. PubMed ID: 32006274
    [TBL] [Abstract][Full Text] [Related]  

  • 38. PDB-Explorer: a web-based interactive map of the protein data bank in shape space.
    Jin X; Awale M; Zasso M; Kostro D; Patiny L; Reymond JL
    BMC Bioinformatics; 2015 Oct; 16():339. PubMed ID: 26493835
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.
    Joosten RP; Joosten K; Cohen SX; Vriend G; Perrakis A
    Bioinformatics; 2011 Dec; 27(24):3392-8. PubMed ID: 22034521
    [TBL] [Abstract][Full Text] [Related]  

  • 40. History of Protein Data Bank Japan: standing at the beginning of the age of structural genomics.
    Kurisu G; Bekker GJ; Nakagawa A
    Biophys Rev; 2022 Dec; 14(6):1233-1238. PubMed ID: 36532871
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.