These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

66 related articles for article (PubMed ID: 30776078)

  • 1. A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.
    Masutani B; Morishita S
    Bioinformatics; 2019 Feb; 35(4):584-592. PubMed ID: 30776078
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient real-time selective genome sequencing on resource-constrained devices.
    Shih PJ; Saadat H; Parameswaran S; Gamaarachchi H
    Gigascience; 2022 Dec; 12():. PubMed ID: 37395631
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DeepNano-blitz: a fast base caller for MinION nanopore sequencers.
    Boža V; Perešíni P; Brejová B; Vinař T
    Bioinformatics; 2020 Aug; 36(14):4191-4192. PubMed ID: 32374816
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SimReadUntil for benchmarking selective sequencing algorithms on ONT devices.
    Mordig M; Rätsch G; Kahles A
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38603597
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Nanocall: an open source basecaller for Oxford Nanopore sequencing data.
    David M; Dursi LJ; Yao D; Boutros PC; Simpson JT
    Bioinformatics; 2017 Jan; 33(1):49-55. PubMed ID: 27614348
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).
    Deshpande SV; Reed TM; Sullivan RF; Kerkhof LJ; Beigel KM; Wade MM
    Genes (Basel); 2019 Jul; 10(8):. PubMed ID: 31366182
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Nanopore sequencing data analysis: state of the art, applications and challenges.
    Magi A; Semeraro R; Mingrino A; Giusti B; D'Aurizio R
    Brief Bioinform; 2018 Nov; 19(6):1256-1272. PubMed ID: 28637243
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
    Chen X; Wang C; Tang S; Yu C; Zou Q
    BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.
    Samant SS; Xia J; Muyan-Ozcelik P; Owens JD
    Med Phys; 2008 Aug; 35(8):3546-53. PubMed ID: 18777915
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multi-GPU implementation of a VMAT treatment plan optimization algorithm.
    Tian Z; Peng F; Folkerts M; Tan J; Jia X; Jiang SB
    Med Phys; 2015 Jun; 42(6):2841-52. PubMed ID: 26127037
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A first look at the Oxford Nanopore MinION sequencer.
    Mikheyev AS; Tin MM
    Mol Ecol Resour; 2014 Nov; 14(6):1097-102. PubMed ID: 25187008
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Realtime analysis and visualization of MinION sequencing data with npReader.
    Cao MD; Ganesamoorthy D; Cooper MA; Coin LJ
    Bioinformatics; 2016 Mar; 32(5):764-6. PubMed ID: 26556383
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria.
    Edwards HS; Krishnakumar R; Sinha A; Bird SW; Patel KD; Bartsch MS
    Sci Rep; 2019 Aug; 9(1):11475. PubMed ID: 31391493
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NanoDJ: a Dockerized Jupyter notebook for interactive Oxford Nanopore MinION sequence manipulation and genome assembly.
    Rodríguez-Pérez H; Hernández-Beeftink T; Lorenzo-Salazar JM; Roda-García JL; Pérez-González CJ; Colebrook M; Flores C
    BMC Bioinformatics; 2019 May; 20(1):234. PubMed ID: 31072312
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Serogroup-level resolution of the "Super-7" Shiga toxin-producing Escherichia coli using nanopore single-molecule DNA sequencing.
    Peritz A; Paoli GC; Chen CY; Gehring AG
    Anal Bioanal Chem; 2018 Sep; 410(22):5439-5444. PubMed ID: 29374775
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias.
    Krishnakumar R; Sinha A; Bird SW; Jayamohan H; Edwards HS; Schoeniger JS; Patel KD; Branda SS; Bartsch MS
    Sci Rep; 2018 Feb; 8(1):3159. PubMed ID: 29453452
    [TBL] [Abstract][Full Text] [Related]  

  • 20. NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles.
    Leggett RM; Heavens D; Caccamo M; Clark MD; Davey RP
    Bioinformatics; 2016 Jan; 32(1):142-4. PubMed ID: 26382197
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.