223 related articles for article (PubMed ID: 30791935)
1. dStruct: identifying differentially reactive regions from RNA structurome profiling data.
Choudhary K; Lai YH; Tran EJ; Aviran S
Genome Biol; 2019 Feb; 20(1):40. PubMed ID: 30791935
[TBL] [Abstract][Full Text] [Related]
2. Decoding the RNA structurome.
Lu Z; Chang HY
Curr Opin Struct Biol; 2016 Feb; 36():142-8. PubMed ID: 26923056
[TBL] [Abstract][Full Text] [Related]
3. Dawn of the in vivo RNA structurome and interactome.
Kwok CK
Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722
[TBL] [Abstract][Full Text] [Related]
4. Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS.
Chorostecki U; Willis JR; Saus E; Gabaldon T
Methods Mol Biol; 2021; 2284():51-62. PubMed ID: 33835437
[TBL] [Abstract][Full Text] [Related]
5. RNAdt: An online tutorial and data portal for the RNA structurome era.
Zhou N; Bao J
Biosystems; 2020 Mar; 189():104065. PubMed ID: 31669269
[TBL] [Abstract][Full Text] [Related]
6. StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.
Tack DC; Tang Y; Ritchey LE; Assmann SM; Bevilacqua PC
Methods; 2018 Jul; 143():12-15. PubMed ID: 29410279
[TBL] [Abstract][Full Text] [Related]
7. Differential analysis of RNA structure probing experiments at nucleotide resolution: uncovering regulatory functions of RNA structure.
Yu B; Li P; Zhang QC; Hou L
Nat Commun; 2022 Jul; 13(1):4227. PubMed ID: 35869080
[TBL] [Abstract][Full Text] [Related]
8. The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.
Kwok CK; Tang Y; Assmann SM; Bevilacqua PC
Trends Biochem Sci; 2015 Apr; 40(4):221-32. PubMed ID: 25797096
[TBL] [Abstract][Full Text] [Related]
9. Accurate detection of RNA stem-loops in structurome data reveals widespread association with protein binding sites.
Radecki P; Uppuluri R; Deshpande K; Aviran S
RNA Biol; 2021 Oct; 18(sup1):521-536. PubMed ID: 34606413
[TBL] [Abstract][Full Text] [Related]
10. High-Throughput Nuclease Probing of RNA Structures Using FragSeq.
Uzilov AV; Underwood JG
Methods Mol Biol; 2016; 1490():105-34. PubMed ID: 27665596
[TBL] [Abstract][Full Text] [Related]
11. PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures.
Ledda M; Aviran S
Genome Biol; 2018 Mar; 19(1):28. PubMed ID: 29495968
[TBL] [Abstract][Full Text] [Related]
12. Genome-Wide Analysis of RNA Secondary Structure.
Bevilacqua PC; Ritchey LE; Su Z; Assmann SM
Annu Rev Genet; 2016 Nov; 50():235-266. PubMed ID: 27648642
[TBL] [Abstract][Full Text] [Related]
13. SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.
Ouyang Z; Snyder MP; Chang HY
Genome Res; 2013 Feb; 23(2):377-87. PubMed ID: 23064747
[TBL] [Abstract][Full Text] [Related]
14. Probing the dynamic RNA structurome and its functions.
Spitale RC; Incarnato D
Nat Rev Genet; 2023 Mar; 24(3):178-196. PubMed ID: 36348050
[TBL] [Abstract][Full Text] [Related]
15. Recent advances in RNA structurome.
Xu B; Zhu Y; Cao C; Chen H; Jin Q; Li G; Ma J; Yang SL; Zhao J; Zhu J; Ding Y; Fang X; Jin Y; Kwok CK; Ren A; Wan Y; Wang Z; Xue Y; Zhang H; Zhang QC; Zhou Y
Sci China Life Sci; 2022 Jul; 65(7):1285-1324. PubMed ID: 35717434
[TBL] [Abstract][Full Text] [Related]
16. Understanding the transcriptome through RNA structure.
Wan Y; Kertesz M; Spitale RC; Segal E; Chang HY
Nat Rev Genet; 2011 Aug; 12(9):641-55. PubMed ID: 21850044
[TBL] [Abstract][Full Text] [Related]
17. RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing.
Piao M; Sun L; Zhang QC
Genomics Proteomics Bioinformatics; 2017 Oct; 15(5):267-278. PubMed ID: 29031843
[TBL] [Abstract][Full Text] [Related]
18. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.
Underwood JG; Uzilov AV; Katzman S; Onodera CS; Mainzer JE; Mathews DH; Lowe TM; Salama SR; Haussler D
Nat Methods; 2010 Dec; 7(12):995-1001. PubMed ID: 21057495
[TBL] [Abstract][Full Text] [Related]
19. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing.
Wan Y; Qu K; Ouyang Z; Chang HY
Methods Mol Biol; 2016; 1361():141-60. PubMed ID: 26483021
[TBL] [Abstract][Full Text] [Related]
20. The RNA structurome: high-throughput probing.
Westhof E; Romby P
Nat Methods; 2010 Dec; 7(12):965-7. PubMed ID: 21116245
[No Abstract] [Full Text] [Related]
[Next] [New Search]