These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

474 related articles for article (PubMed ID: 30808370)

  • 1. Identification of transcription factor binding sites using ATAC-seq.
    Li Z; Schulz MH; Look T; Begemann M; Zenke M; Costa IG
    Genome Biol; 2019 Feb; 20(1):45. PubMed ID: 30808370
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.
    Karabacak Calviello A; Hirsekorn A; Wurmus R; Yusuf D; Ohler U
    Genome Biol; 2019 Feb; 20(1):42. PubMed ID: 30791920
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
    Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
    Elife; 2020 Nov; 9():. PubMed ID: 33191916
    [TBL] [Abstract][Full Text] [Related]  

  • 4. XL-DNase-seq: improved footprinting of dynamic transcription factors.
    Oh KS; Ha J; Baek S; Sung MH
    Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ATAC-seq with unique molecular identifiers improves quantification and footprinting.
    Zhu T; Liao K; Zhou R; Xia C; Xie W
    Commun Biol; 2020 Nov; 3(1):675. PubMed ID: 33188264
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.
    Quach B; Furey TS
    Bioinformatics; 2017 Apr; 33(7):956-963. PubMed ID: 27993786
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analysis of computational footprinting methods for DNase sequencing experiments.
    Gusmao EG; Allhoff M; Zenke M; Costa IG
    Nat Methods; 2016 Apr; 13(4):303-9. PubMed ID: 26901649
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.
    Lu Z; Hofmeister BT; Vollmers C; DuBois RM; Schmitz RJ
    Nucleic Acids Res; 2017 Apr; 45(6):e41. PubMed ID: 27903897
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Analytical Approaches for ATAC-seq Data Analysis.
    Smith JP; Sheffield NC
    Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
    Kähärä J; Lähdesmäki H
    Bioinformatics; 2015 Sep; 31(17):2852-9. PubMed ID: 25957350
    [TBL] [Abstract][Full Text] [Related]  

  • 11. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
    Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
    Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
    Bajic M; Maher KA; Deal RB
    Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.
    Yardımcı GG; Frank CL; Crawford GE; Ohler U
    Nucleic Acids Res; 2014 Oct; 42(19):11865-78. PubMed ID: 25294828
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence.
    Ouyang N; Boyle AP
    Genome Res; 2020 Jul; 30(7):1040-1046. PubMed ID: 32660981
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.
    Tarbell ED; Liu T
    Nucleic Acids Res; 2019 Sep; 47(16):e91. PubMed ID: 31199868
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq.
    Lyu R; Gao Y; Wu T; Ye C; Wang P; He C
    Nat Commun; 2024 Aug; 15(1):6852. PubMed ID: 39127768
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assay for Transposase-Accessible Chromatin Using Sequencing of Freshly Isolated Muscle Stem Cells.
    Yekelchyk M; Guenther S; Braun T
    Methods Mol Biol; 2023; 2640():397-412. PubMed ID: 36995609
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
    Sun Y; Miao N; Sun T
    Hereditas; 2019; 156():29. PubMed ID: 31427911
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity.
    Baek S; Goldstein I; Hager GL
    Cell Rep; 2017 May; 19(8):1710-1722. PubMed ID: 28538187
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Measuring Chromatin Accessibility: ATAC-Seq.
    Sahu SK; Basu A; Tiwari VK
    Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.