These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

478 related articles for article (PubMed ID: 30808370)

  • 21. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
    Yan F; Powell DR; Curtis DJ; Wong NC
    Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Assay for Transposase-Accessible Chromatin Using Sequencing (ATAC-seq) Data Analysis.
    Miskimen KLS; Chan ER; Haines JL
    Curr Protoc Hum Genet; 2017 Jan; 92():20.4.1-20.4.13. PubMed ID: 28075484
    [TBL] [Abstract][Full Text] [Related]  

  • 23. The native cistrome and sequence motif families of the maize ear.
    Savadel SD; Hartwig T; Turpin ZM; Vera DL; Lung PY; Sui X; Blank M; Frommer WB; Dennis JH; Zhang J; Bass HW
    PLoS Genet; 2021 Aug; 17(8):e1009689. PubMed ID: 34383745
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
    Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
    Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Mapping Chromatin Accessibility in Human Naïve Pluripotent Stem Cells Using ATAC-Seq.
    Cinkornpumin JK; Hossain I; Pastor WA
    Methods Mol Biol; 2022; 2416():201-211. PubMed ID: 34870838
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.
    Handel AE; Gallone G; Zameel Cader M; Ponting CP
    Hum Mol Genet; 2017 Jan; 26(1):79-89. PubMed ID: 27798116
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Assay for Transposase-Accessible Chromatin-Sequencing Using
    Bright AR; Veenstra GJC
    Cold Spring Harb Protoc; 2019 Jan; 2019(1):. PubMed ID: 30042136
    [TBL] [Abstract][Full Text] [Related]  

  • 28. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
    Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
    BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Prenet: Predictive network from ATAC-SEQ data.
    Salehin N; Tam PPL; Osteil P
    J Bioinform Comput Biol; 2020 Feb; 18(1):2040003. PubMed ID: 32336246
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Biochemical analysis of nucleosome targeting by Tn5 transposase.
    Sato S; Arimura Y; Kujirai T; Harada A; Maehara K; Nogami J; Ohkawa Y; Kurumizaka H
    Open Biol; 2019 Aug; 9(8):190116. PubMed ID: 31409230
    [TBL] [Abstract][Full Text] [Related]  

  • 31. DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data.
    Xu B; Li X; Gao X; Jia Y; Liu J; Li F; Zhang Z
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34875002
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data.
    Tripodi IJ; Chowdhury M; Gruca M; Dowell RD
    PLoS One; 2020; 15(4):e0232332. PubMed ID: 32353042
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA.
    Hu SS; Liu L; Li Q; Ma W; Guertin MJ; Meyer CA; Deng K; Zhang T; Zang C
    Nat Commun; 2022 Sep; 13(1):5533. PubMed ID: 36130957
    [TBL] [Abstract][Full Text] [Related]  

  • 34. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
    Tatara M; Ikeda T; Namekawa SH; Maezawa S
    Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
    Huang L; Li X; Dong L; Wang B; Pan L
    BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A neural network based model effectively predicts enhancers from clinical ATAC-seq samples.
    Thibodeau A; Uyar A; Khetan S; Stitzel ML; Ucar D
    Sci Rep; 2018 Oct; 8(1):16048. PubMed ID: 30375457
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons.
    Merrill CB; Pabon MA; Montgomery AB; Rodan AR; Rothenfluh A
    Sci Rep; 2022 Apr; 12(1):6043. PubMed ID: 35411004
    [TBL] [Abstract][Full Text] [Related]  

  • 39. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
    Buenrostro JD; Wu B; Chang HY; Greenleaf WJ
    Curr Protoc Mol Biol; 2015 Jan; 109():21.29.1-21.29.9. PubMed ID: 25559105
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data.
    Piper J; Elze MC; Cauchy P; Cockerill PN; Bonifer C; Ott S
    Nucleic Acids Res; 2013 Nov; 41(21):e201. PubMed ID: 24071585
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 24.