These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. RNA-Seq in Nonmodel Organisms. Chalifa-Caspi V Methods Mol Biol; 2021; 2243():143-167. PubMed ID: 33606257 [TBL] [Abstract][Full Text] [Related]
5. FX: an RNA-Seq analysis tool on the cloud. Hong D; Rhie A; Park SS; Lee J; Ju YS; Kim S; Yu SB; Bleazard T; Park HS; Rhee H; Chong H; Yang KS; Lee YS; Kim IH; Lee JS; Kim JI; Seo JS Bioinformatics; 2012 Mar; 28(5):721-3. PubMed ID: 22257667 [TBL] [Abstract][Full Text] [Related]
6. Exploring the unmapped DNA and RNA reads in a songbird genome. Laine VN; Gossmann TI; van Oers K; Visser ME; Groenen MAM BMC Genomics; 2019 Jan; 20(1):19. PubMed ID: 30621573 [TBL] [Abstract][Full Text] [Related]
9. Baiting out a full length sequence from unmapped RNA-seq data. Li D; Huang Q; Huang L; Wen J; Luo J; Li Q; Peng Y; Zhang Y BMC Genomics; 2021 Nov; 22(1):857. PubMed ID: 34837950 [TBL] [Abstract][Full Text] [Related]
10. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project. Amrit FRG; Ghazi A J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031 [TBL] [Abstract][Full Text] [Related]
11. De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads. Kerr SC; Gaiti F; Tanurdzic M Methods Mol Biol; 2019; 1933():265-275. PubMed ID: 30945191 [TBL] [Abstract][Full Text] [Related]
13. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data. Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781 [TBL] [Abstract][Full Text] [Related]
14. IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads. Zhao J; Feng H; Zhu D; Zhang C; Xu Y IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(3):938-948. PubMed ID: 29994455 [TBL] [Abstract][Full Text] [Related]
15. RNA-Seq gene expression estimation with read mapping uncertainty. Li B; Ruotti V; Stewart RM; Thomson JA; Dewey CN Bioinformatics; 2010 Feb; 26(4):493-500. PubMed ID: 20022975 [TBL] [Abstract][Full Text] [Related]
16. Unmapped reads from cattle RNAseq data: A source for missing and misassembled sequences in the reference assemblies and for detection of pathogens in the host. Usman T; Hadlich F; Demasius W; Weikard R; Kühn C Genomics; 2017 Jan; 109(1):36-42. PubMed ID: 27913251 [TBL] [Abstract][Full Text] [Related]
17. Characterizing and annotating the genome using RNA-seq data. Chen G; Shi T; Shi L Sci China Life Sci; 2017 Feb; 60(2):116-125. PubMed ID: 27294835 [TBL] [Abstract][Full Text] [Related]
18. Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA. Tripathi KP; Evangelista D; Zuccaro A; Guarracino MR PLoS One; 2015; 10(11):e0140268. PubMed ID: 26581084 [TBL] [Abstract][Full Text] [Related]
19. ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues. Mangul S; Yang HT; Strauli N; Gruhl F; Porath HT; Hsieh K; Chen L; Daley T; Christenson S; Wesolowska-Andersen A; Spreafico R; Rios C; Eng C; Smith AD; Hernandez RD; Ophoff RA; Santana JR; Levanon EY; Woodruff PG; Burchard E; Seibold MA; Shifman S; Eskin E; Zaitlen N Genome Biol; 2018 Feb; 19(1):36. PubMed ID: 29548336 [TBL] [Abstract][Full Text] [Related]