These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 30821318)

  • 1. SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight.
    Li C; Li K; Chen T; Zhu Y; He Q
    Bioinformatics; 2019 Oct; 35(19):3861-3863. PubMed ID: 30821318
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MCtandem: an efficient tool for large-scale peptide identification on many integrated core (MIC) architecture.
    Li C; Li K; Li K; Lin F
    BMC Bioinformatics; 2019 Jul; 20(1):397. PubMed ID: 31315562
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SWPepNovo: An Efficient De Novo Peptide Sequencing Tool for Large-scale MS/MS Spectra Analysis.
    Li C; Li K; Li K; Xie X; Lin F
    Int J Biol Sci; 2019; 15(9):1787-1801. PubMed ID: 31523183
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High performance computing of DGDFT for tens of thousands of atoms using millions of cores on Sunway TaihuLight.
    Hu W; Qin X; Jiang Q; Chen J; An H; Jia W; Li F; Liu X; Chen D; Liu F; Zhao Y; Yang J
    Sci Bull (Beijing); 2021 Jan; 66(2):111-119. PubMed ID: 36654217
    [TBL] [Abstract][Full Text] [Related]  

  • 5. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
    J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework.
    Li C; Chen T; He Q; Zhu Y; Li K
    Bioinformatics; 2017 Mar; 33(6):944-946. PubMed ID: 27993788
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs.
    Li Y; Chi H; Xia L; Chu X
    BMC Bioinformatics; 2014 Apr; 15():121. PubMed ID: 24773593
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Deep learning embedder method and tool for mass spectra similarity search.
    Qin C; Luo X; Deng C; Shu K; Zhu W; Griss J; Hermjakob H; Bai M; Perez-Riverol Y
    J Proteomics; 2021 Feb; 232():104070. PubMed ID: 33307250
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PDV: an integrative proteomics data viewer.
    Li K; Vaudel M; Zhang B; Ren Y; Wen B
    Bioinformatics; 2019 Apr; 35(7):1249-1251. PubMed ID: 30169737
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Large-Scale Simulation of Full Three-Dimensional Flow and Combustion of an Aero-Turbofan Engine on Sunway TaihuLight Supercomputer.
    Xu Q; Ren H; Gu H; Wu J; Wang J; Xie Z; Yang G
    Entropy (Basel); 2023 Mar; 25(3):. PubMed ID: 36981327
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PGPointNovo: an efficient neural network-based tool for parallel
    Xu X; Yang C; He Q; Shu K; Xinpu Y; Chen Z; Zhu Y; Chen T
    Bioinform Adv; 2023; 3(1):vbad057. PubMed ID: 37128577
    [TBL] [Abstract][Full Text] [Related]  

  • 12. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
    MacLean B; Eng JK; Beavis RC; McIntosh M
    Bioinformatics; 2006 Nov; 22(22):2830-2. PubMed ID: 16877754
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Confidence assignment for mass spectrometry based peptide identifications via the extreme value distribution.
    Alves G; Yu YK
    Bioinformatics; 2016 Sep; 32(17):2642-9. PubMed ID: 27153659
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A quantum circuit simulator and its applications on Sunway TaihuLight supercomputer.
    Wang Z; Chen Z; Wang S; Li W; Gu Y; Guo G; Wei Z
    Sci Rep; 2021 Jan; 11(1):355. PubMed ID: 33432088
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 16. COSS: A Fast and User-Friendly Tool for Spectral Library Searching.
    Shiferaw GA; Vandermarliere E; Hulstaert N; Gabriels R; Martens L; Volders PJ
    J Proteome Res; 2020 Jul; 19(7):2786-2793. PubMed ID: 32384242
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing.
    Awan MG; Saeed F
    Bioinformatics; 2016 May; 32(10):1518-26. PubMed ID: 26801958
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accelerating open modification spectral library searching on tensor core in high-dimensional space.
    Kang J; Xu W; Bittremieux W; Moshiri N; Rosing T
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37369033
    [TBL] [Abstract][Full Text] [Related]  

  • 19. pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework.
    Yang H; Chi H; Zeng WF; Zhou WJ; He SM
    Bioinformatics; 2019 Jul; 35(14):i183-i190. PubMed ID: 31510687
    [TBL] [Abstract][Full Text] [Related]  

  • 20. IPeak: An open source tool to combine results from multiple MS/MS search engines.
    Wen B; Du C; Li G; Ghali F; Jones AR; Käll L; Xu S; Zhou R; Ren Z; Feng Q; Xu X; Wang J
    Proteomics; 2015 Sep; 15(17):2916-20. PubMed ID: 25951428
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.