138 related articles for article (PubMed ID: 30821318)
1. SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight.
Li C; Li K; Chen T; Zhu Y; He Q
Bioinformatics; 2019 Oct; 35(19):3861-3863. PubMed ID: 30821318
[TBL] [Abstract][Full Text] [Related]
2. MCtandem: an efficient tool for large-scale peptide identification on many integrated core (MIC) architecture.
Li C; Li K; Li K; Lin F
BMC Bioinformatics; 2019 Jul; 20(1):397. PubMed ID: 31315562
[TBL] [Abstract][Full Text] [Related]
3. SWPepNovo: An Efficient De Novo Peptide Sequencing Tool for Large-scale MS/MS Spectra Analysis.
Li C; Li K; Li K; Xie X; Lin F
Int J Biol Sci; 2019; 15(9):1787-1801. PubMed ID: 31523183
[TBL] [Abstract][Full Text] [Related]
4. High performance computing of DGDFT for tens of thousands of atoms using millions of cores on Sunway TaihuLight.
Hu W; Qin X; Jiang Q; Chen J; An H; Jia W; Li F; Liu X; Chen D; Liu F; Zhao Y; Yang J
Sci Bull (Beijing); 2021 Jan; 66(2):111-119. PubMed ID: 36654217
[TBL] [Abstract][Full Text] [Related]
5. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
6. MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework.
Li C; Chen T; He Q; Zhu Y; Li K
Bioinformatics; 2017 Mar; 33(6):944-946. PubMed ID: 27993788
[TBL] [Abstract][Full Text] [Related]
7. Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs.
Li Y; Chi H; Xia L; Chu X
BMC Bioinformatics; 2014 Apr; 15():121. PubMed ID: 24773593
[TBL] [Abstract][Full Text] [Related]
8. Deep learning embedder method and tool for mass spectra similarity search.
Qin C; Luo X; Deng C; Shu K; Zhu W; Griss J; Hermjakob H; Bai M; Perez-Riverol Y
J Proteomics; 2021 Feb; 232():104070. PubMed ID: 33307250
[TBL] [Abstract][Full Text] [Related]
9. PDV: an integrative proteomics data viewer.
Li K; Vaudel M; Zhang B; Ren Y; Wen B
Bioinformatics; 2019 Apr; 35(7):1249-1251. PubMed ID: 30169737
[TBL] [Abstract][Full Text] [Related]
10. Large-Scale Simulation of Full Three-Dimensional Flow and Combustion of an Aero-Turbofan Engine on Sunway TaihuLight Supercomputer.
Xu Q; Ren H; Gu H; Wu J; Wang J; Xie Z; Yang G
Entropy (Basel); 2023 Mar; 25(3):. PubMed ID: 36981327
[TBL] [Abstract][Full Text] [Related]
11. PGPointNovo: an efficient neural network-based tool for parallel
Xu X; Yang C; He Q; Shu K; Xinpu Y; Chen Z; Zhu Y; Chen T
Bioinform Adv; 2023; 3(1):vbad057. PubMed ID: 37128577
[TBL] [Abstract][Full Text] [Related]
12. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
MacLean B; Eng JK; Beavis RC; McIntosh M
Bioinformatics; 2006 Nov; 22(22):2830-2. PubMed ID: 16877754
[TBL] [Abstract][Full Text] [Related]
13. Confidence assignment for mass spectrometry based peptide identifications via the extreme value distribution.
Alves G; Yu YK
Bioinformatics; 2016 Sep; 32(17):2642-9. PubMed ID: 27153659
[TBL] [Abstract][Full Text] [Related]
14. A quantum circuit simulator and its applications on Sunway TaihuLight supercomputer.
Wang Z; Chen Z; Wang S; Li W; Gu Y; Guo G; Wei Z
Sci Rep; 2021 Jan; 11(1):355. PubMed ID: 33432088
[TBL] [Abstract][Full Text] [Related]
15. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
16. COSS: A Fast and User-Friendly Tool for Spectral Library Searching.
Shiferaw GA; Vandermarliere E; Hulstaert N; Gabriels R; Martens L; Volders PJ
J Proteome Res; 2020 Jul; 19(7):2786-2793. PubMed ID: 32384242
[TBL] [Abstract][Full Text] [Related]
17. MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing.
Awan MG; Saeed F
Bioinformatics; 2016 May; 32(10):1518-26. PubMed ID: 26801958
[TBL] [Abstract][Full Text] [Related]
18. Accelerating open modification spectral library searching on tensor core in high-dimensional space.
Kang J; Xu W; Bittremieux W; Moshiri N; Rosing T
Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37369033
[TBL] [Abstract][Full Text] [Related]
19. pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework.
Yang H; Chi H; Zeng WF; Zhou WJ; He SM
Bioinformatics; 2019 Jul; 35(14):i183-i190. PubMed ID: 31510687
[TBL] [Abstract][Full Text] [Related]
20. IPeak: An open source tool to combine results from multiple MS/MS search engines.
Wen B; Du C; Li G; Ghali F; Jones AR; Käll L; Xu S; Zhou R; Ren Z; Feng Q; Xu X; Wang J
Proteomics; 2015 Sep; 15(17):2916-20. PubMed ID: 25951428
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]