These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 30825371)

  • 1. MetaMarker: a pipeline for de novo discovery of novel metagenomic biomarkers.
    Koohi-Moghadam M; Borad MJ; Tran NL; Swanson KR; Boardman LA; Sun H; Wang J
    Bioinformatics; 2019 Oct; 35(19):3812-3814. PubMed ID: 30825371
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Struo: a pipeline for building custom databases for common metagenome profilers.
    de la Cuesta-Zuluaga J; Ley RE; Youngblut ND
    Bioinformatics; 2020 Apr; 36(7):2314-2315. PubMed ID: 31778148
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MIDAS2: Metagenomic Intra-species Diversity Analysis System.
    Zhao C; Dimitrov B; Goldman M; Nayfach S; Pollard KS
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36321886
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MOCAT2: a metagenomic assembly, annotation and profiling framework.
    Kultima JR; Coelho LP; Forslund K; Huerta-Cepas J; Li SS; Driessen M; Voigt AY; Zeller G; Sunagawa S; Bork P
    Bioinformatics; 2016 Aug; 32(16):2520-3. PubMed ID: 27153620
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer.
    Yu J; Feng Q; Wong SH; Zhang D; Liang QY; Qin Y; Tang L; Zhao H; Stenvang J; Li Y; Wang X; Xu X; Chen N; Wu WK; Al-Aama J; Nielsen HJ; Kiilerich P; Jensen BA; Yau TO; Lan Z; Jia H; Li J; Xiao L; Lam TY; Ng SC; Cheng AS; Wong VW; Chan FK; Xu X; Yang H; Madsen L; Datz C; Tilg H; Wang J; Brünner N; Kristiansen K; Arumugam M; Sung JJ; Wang J
    Gut; 2017 Jan; 66(1):70-78. PubMed ID: 26408641
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data.
    Plaza Oñate F; Le Chatelier E; Almeida M; Cervino ACL; Gauthier F; Magoulès F; Ehrlich SD; Pichaud M
    Bioinformatics; 2019 May; 35(9):1544-1552. PubMed ID: 30252023
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes.
    Nakatsu G; Zhou H; Wu WKK; Wong SH; Coker OO; Dai Z; Li X; Szeto CH; Sugimura N; Lam TY; Yu AC; Wang X; Chen Z; Wong MC; Ng SC; Chan MTV; Chan PKS; Chan FKL; Sung JJ; Yu J
    Gastroenterology; 2018 Aug; 155(2):529-541.e5. PubMed ID: 29689266
    [TBL] [Abstract][Full Text] [Related]  

  • 8. IHM-DB: a curated collection of metagenomics data from the Indian Himalayan Region, and automated pipeline for 16S rRNA amplicon-based analysis (AutoQii2).
    Khatri A; Thakur A; Lepcha A; Acharya V; Kumar R
    Database (Oxford); 2023 Jun; 2023():. PubMed ID: 37279783
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DeepMAsED: evaluating the quality of metagenomic assemblies.
    Mineeva O; Rojas-Carulla M; Ley RE; Schölkopf B; Youngblut ND
    Bioinformatics; 2020 May; 36(10):3011-3017. PubMed ID: 32096824
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SimkaMin: fast and resource frugal de novo comparative metagenomics.
    Benoit G; Mariadassou M; Robin S; Schbath S; Peterlongo P; Lemaitre C
    Bioinformatics; 2020 Feb; 36(4):1275-1276. PubMed ID: 31504187
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.
    Peabody MA; Lau WYV; Hoad GR; Jia B; Maguire F; Gray KL; Beiko RG; Brinkman FSL
    Bioinformatics; 2020 May; 36(10):3043-3048. PubMed ID: 32108861
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples.
    Liu Y; Bible PW; Zou B; Liang Q; Dong C; Wen X; Li Y; Ge X; Li X; Deng X; Ma R; Guo S; Liang J; Chen T; Pan W; Liu L; Chen W; Wang X; Wei L
    Bioinformatics; 2020 Mar; 36(5):1577-1583. PubMed ID: 31626280
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.
    Czajkowski MD; Vance DP; Frese SA; Casaburi G
    Bioinformatics; 2019 Jul; 35(13):2318-2319. PubMed ID: 30475995
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.
    Ranjan P; Brown CA; Erb-Downward JR; Dickson RP
    Bioinformatics; 2022 Aug; 38(15):3830-3832. PubMed ID: 35695743
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
    Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
    Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MeCorS: Metagenome-enabled error correction of single cell sequencing reads.
    Bremges A; Singer E; Woyke T; Sczyrba A
    Bioinformatics; 2016 Jul; 32(14):2199-201. PubMed ID: 27153586
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ARGprofiler-a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.
    Martiny HM; Pyrounakis N; Petersen TN; Lukjančenko O; Aarestrup FM; Clausen PTLC; Munk P
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38377397
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
    Ma A; Sun M; McDermaid A; Liu B; Ma Q
    Bioinformatics; 2019 Nov; 35(21):4474-4477. PubMed ID: 31116375
    [TBL] [Abstract][Full Text] [Related]  

  • 19. NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes.
    Tu Q; Lin L; Cheng L; Deng Y; He Z
    Bioinformatics; 2019 Mar; 35(6):1040-1048. PubMed ID: 30165481
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fast and sensitive taxonomic assignment to metagenomic contigs.
    Mirdita M; Steinegger M; Breitwieser F; Söding J; Levy Karin E
    Bioinformatics; 2021 Sep; 37(18):3029-3031. PubMed ID: 33734313
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.