These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 30832568)

  • 1. DEvis: an R package for aggregation and visualization of differential expression data.
    Price A; Caciula A; Guo C; Lee B; Morrison J; Rasmussen A; Lipkin WI; Jain K
    BMC Bioinformatics; 2019 Mar; 20(1):110. PubMed ID: 30832568
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ideal: an R/Bioconductor package for interactive differential expression analysis.
    Marini F; Linke J; Binder H
    BMC Bioinformatics; 2020 Dec; 21(1):565. PubMed ID: 33297942
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.
    Marini F; Ludt A; Linke J; Strauch K
    BMC Bioinformatics; 2021 Dec; 22(1):610. PubMed ID: 34949163
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Visualization methods for differential expression analysis.
    Rutter L; Moran Lauter AN; Graham MA; Cook D
    BMC Bioinformatics; 2019 Sep; 20(1):458. PubMed ID: 31492109
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 6. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
    Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
    BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TOmicsVis: An all-in-one transcriptomic analysis and visualization R package with Shinyapp interface.
    Miao BB; Dong W; Han ZF; Luo X; Ke CH; You WW
    Imeta; 2023 Nov; 2(4):e137. PubMed ID: 38868229
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.
    Lohse M; Bolger AM; Nagel A; Fernie AR; Lunn JE; Stitt M; Usadel B
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W622-7. PubMed ID: 22684630
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
    Amrit FRG; Ghazi A
    J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data.
    Fontoura CA; Castellani G; Mombach JC
    Comput Biol Med; 2016 Nov; 78():76-80. PubMed ID: 27665533
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An automated RNA-Seq analysis pipeline to identify and visualize differentially expressed genes and pathways in CHO cells.
    Chen C; Le H; Goudar CT
    Biotechnol Prog; 2015; 31(5):1150-62. PubMed ID: 26150012
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization.
    He W; Zhao S; Zhang C; Vincent MS; Zhang B
    Methods Mol Biol; 2018; 1751():57-70. PubMed ID: 29508289
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RCPA: An Open-Source R Package for Data Processing, Differential Analysis, Consensus Pathway Analysis, and Visualization.
    Nguyen H; Nguyen H; Maghsoudi Z; Tran B; Draghici S; Nguyen T
    Curr Protoc; 2024 May; 4(5):e1036. PubMed ID: 38713133
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VennBLAST—whole transcriptome comparison and visualization tool.
    Zahavi T; Stelzer G; Strauss L; Salmon AY; Salmon-Divon M
    Genomics; 2015 Mar; 105(3):131-6. PubMed ID: 25535680
    [TBL] [Abstract][Full Text] [Related]  

  • 16. IntLIM: integration using linear models of metabolomics and gene expression data.
    Siddiqui JK; Baskin E; Liu M; Cantemir-Stone CZ; Zhang B; Bonneville R; McElroy JP; Coombes KR; Mathé EA
    BMC Bioinformatics; 2018 Mar; 19(1):81. PubMed ID: 29506475
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis.
    Dimitrov D; Gu Q
    PeerJ; 2020; 8():e10469. PubMed ID: 33391870
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.
    Russo PST; Ferreira GR; Cardozo LE; Bürger MC; Arias-Carrasco R; Maruyama SR; Hirata TDC; Lima DS; Passos FM; Fukutani KF; Lever M; Silva JS; Maracaja-Coutinho V; Nakaya HI
    BMC Bioinformatics; 2018 Feb; 19(1):56. PubMed ID: 29458351
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
    Chiesa M; Colombo GI; Piacentini L
    Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
    [TBL] [Abstract][Full Text] [Related]  

  • 20. VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
    Cornwell M; Vangala M; Taing L; Herbert Z; Köster J; Li B; Sun H; Li T; Zhang J; Qiu X; Pun M; Jeselsohn R; Brown M; Liu XS; Long HW
    BMC Bioinformatics; 2018 Apr; 19(1):135. PubMed ID: 29649993
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.