These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

90 related articles for article (PubMed ID: 30832570)

  • 1. CellSim: a novel software to calculate cell similarity and identify their co-regulation networks.
    Li L; Che D; Wang X; Zhang P; Rahman SU; Zhao J; Yu J; Tao S; Lu H; Liao M
    BMC Bioinformatics; 2019 Mar; 20(1):111. PubMed ID: 30832570
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification of regulatory modules in genome scale transcription regulatory networks.
    Song Q; Grene R; Heath LS; Li S
    BMC Syst Biol; 2017 Dec; 11(1):140. PubMed ID: 29246163
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis.
    Polouliakh N; Horton P; Shibanai K; Takata K; Ludwig V; Ghosh S; Kitano H
    BMC Genomics; 2018 Sep; 19(1):715. PubMed ID: 30261835
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NetLand: quantitative modeling and visualization of Waddington's epigenetic landscape using probabilistic potential.
    Guo J; Lin F; Zhang X; Tanavde V; Zheng J
    Bioinformatics; 2017 May; 33(10):1583-1585. PubMed ID: 28108450
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
    Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
    Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Path2enet: generation of human pathway-derived networks in an expression specific context.
    Droste C; De Las Rivas J
    BMC Genomics; 2016 Oct; 17(Suppl 8):731. PubMed ID: 27801297
    [TBL] [Abstract][Full Text] [Related]  

  • 7. NetBioV: an R package for visualizing large network data in biology and medicine.
    Tripathi S; Dehmer M; Emmert-Streib F
    Bioinformatics; 2014 Oct; 30(19):2834-6. PubMed ID: 24928209
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PySCeSToolbox: a collection of metabolic pathway analysis tools.
    Christensen CD; Hofmeyr JS; Rohwer JM
    Bioinformatics; 2018 Jan; 34(1):124-125. PubMed ID: 28968872
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci.
    Falcone E; Grandoni L; Garibaldi F; Manni I; Filligoi G; Piaggio G; Gurtner A
    PLoS One; 2016; 11(4):e0153658. PubMed ID: 27082112
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
    Peng J; Uygun S; Kim T; Wang Y; Rhee SY; Chen J
    BMC Bioinformatics; 2015 Feb; 16():44. PubMed ID: 25886899
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks.
    Park H; Shimamura T; Imoto S; Miyano S
    J Comput Biol; 2018 Feb; 25(2):130-145. PubMed ID: 29053381
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular Interaction Networks to Select Factors for Cell Conversion.
    Ouyang JF; Kamaraj US; Polo JM; Gough J; Rackham OJL
    Methods Mol Biol; 2019; 1975():333-361. PubMed ID: 31062318
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human.
    Liang C; Li Y; Luo J; Zhang Z
    Bioinformatics; 2015 Jul; 31(14):2348-55. PubMed ID: 25788622
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bandage: interactive visualization of de novo genome assemblies.
    Wick RR; Schultz MB; Zobel J; Holt KE
    Bioinformatics; 2015 Oct; 31(20):3350-2. PubMed ID: 26099265
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.
    Hosseinpour B; Bakhtiarizadeh MR; Khosravi P; Ebrahimie E
    Gene; 2013 Dec; 531(2):212-9. PubMed ID: 24042128
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts.
    Lord E; Le Cam M; Bapteste É; Méheust R; Makarenkov V; Lapointe FJ
    PLoS One; 2016; 11(8):e0161474. PubMed ID: 27580188
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SELANSI: a toolbox for simulation of stochastic gene regulatory networks.
    Pájaro M; Otero-Muras I; Vázquez C; Alonso AA
    Bioinformatics; 2018 Mar; 34(5):893-895. PubMed ID: 29040384
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Biomarker identification and trans-regulatory network analyses in esophageal adenocarcinoma and Barrett's esophagus.
    Lv J; Guo L; Wang JH; Yan YZ; Zhang J; Wang YY; Yu Y; Huang YF; Zhao HP
    World J Gastroenterol; 2019 Jan; 25(2):233-244. PubMed ID: 30670912
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.
    Watson-Haigh NS; Kadarmideen HN; Reverter A
    Bioinformatics; 2010 Feb; 26(3):411-3. PubMed ID: 20007253
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CoRegNet: reconstruction and integrated analysis of co-regulatory networks.
    Nicolle R; Radvanyi F; Elati M
    Bioinformatics; 2015 Sep; 31(18):3066-8. PubMed ID: 25979476
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.