359 related articles for article (PubMed ID: 30850542)
1. Interplay between DNA sequence and negative superhelicity drives R-loop structures.
Stolz R; Sulthana S; Hartono SR; Malig M; Benham CJ; Chedin F
Proc Natl Acad Sci U S A; 2019 Mar; 116(13):6260-6269. PubMed ID: 30850542
[TBL] [Abstract][Full Text] [Related]
2. Emerging roles for R-loop structures in the management of topological stress.
Chedin F; Benham CJ
J Biol Chem; 2020 Apr; 295(14):4684-4695. PubMed ID: 32107311
[TBL] [Abstract][Full Text] [Related]
3. R-loop stability as a function of RNA structure and size.
Landgraf R; Chen CH; Sigman DS
Nucleic Acids Res; 1995 Sep; 23(17):3516-23. PubMed ID: 7567464
[TBL] [Abstract][Full Text] [Related]
4. The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression.
Sun D; Hurley LH
J Med Chem; 2009 May; 52(9):2863-74. PubMed ID: 19385599
[TBL] [Abstract][Full Text] [Related]
5. The extruded non-template strand determines the architecture of R-loops.
Carrasco-Salas Y; Malapert A; Sulthana S; Molcrette B; Chazot-Franguiadakis L; Bernard P; Chédin F; Faivre-Moskalenko C; Vanoosthuyse V
Nucleic Acids Res; 2019 Jul; 47(13):6783-6795. PubMed ID: 31066439
[TBL] [Abstract][Full Text] [Related]
6. Ultra-deep Coverage Single-molecule R-loop Footprinting Reveals Principles of R-loop Formation.
Malig M; Hartono SR; Giafaglione JM; Sanz LA; Chedin F
J Mol Biol; 2020 Mar; 432(7):2271-2288. PubMed ID: 32105733
[TBL] [Abstract][Full Text] [Related]
7. G clustering is important for the initiation of transcription-induced R-loops in vitro, whereas high G density without clustering is sufficient thereafter.
Roy D; Lieber MR
Mol Cell Biol; 2009 Jun; 29(11):3124-33. PubMed ID: 19307304
[TBL] [Abstract][Full Text] [Related]
8. Detection and Characterization of R Loop Structures.
Boque-Sastre R; Soler M; Guil S
Methods Mol Biol; 2017; 1543():231-242. PubMed ID: 28349431
[TBL] [Abstract][Full Text] [Related]
9. Detecting R-Loop Formation Using a Plasmid-Based In Vitro Transcription Assay.
Shen L; Yang Y
Methods Mol Biol; 2023; 2666():265-278. PubMed ID: 37166671
[TBL] [Abstract][Full Text] [Related]
10. Double stranded scission of DNA directed through sequence-specific R-loop formation.
Landgraf R; Chen CH; Sigman DS
Nucleic Acids Res; 1995 Sep; 23(17):3524-30. PubMed ID: 7567465
[TBL] [Abstract][Full Text] [Related]
11. Sex-specific variation in R-loop formation in Drosophila melanogaster.
Stanek TJ; Cao W; Mehra RM; Ellison CE
PLoS Genet; 2022 Jun; 18(6):e1010268. PubMed ID: 35687614
[TBL] [Abstract][Full Text] [Related]
12. DNA superhelicity affects the formation of transcription preinitiation complex on eukaryotic genes differently.
Mizutani M; Ura K; Hirose S
Nucleic Acids Res; 1991 Jun; 19(11):2907-11. PubMed ID: 1647522
[TBL] [Abstract][Full Text] [Related]
13. Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA.
Duquette ML; Handa P; Vincent JA; Taylor AF; Maizels N
Genes Dev; 2004 Jul; 18(13):1618-29. PubMed ID: 15231739
[TBL] [Abstract][Full Text] [Related]
14. Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence.
Paner TM; Riccelli PV; Owczarzy R; Benight AS
Biopolymers; 1996 Dec; 39(6):779-93. PubMed ID: 8946800
[TBL] [Abstract][Full Text] [Related]
15. Statistical mechanical approach for predicting the transition to non-B DNA structures in supercoiled DNA.
Katsura S; Makishima F; Nishimura H
J Biomol Struct Dyn; 1993 Feb; 10(4):639-56. PubMed ID: 8466670
[TBL] [Abstract][Full Text] [Related]
16. DNA hybrids stabilized by heterologies.
Belotserkovskii BP; Reddy G; Zarling DA
Biochemistry; 1999 Aug; 38(33):10785-92. PubMed ID: 10451374
[TBL] [Abstract][Full Text] [Related]
17. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
Kuznetsov VA; Bondarenko V; Wongsurawat T; Yenamandra SP; Jenjaroenpun P
Nucleic Acids Res; 2018 Sep; 46(15):7566-7585. PubMed ID: 29945198
[TBL] [Abstract][Full Text] [Related]
18. Interaction in vitro of type III intermediate filament proteins with triplex DNA.
Li G; Tolstonog GV; Traub P
DNA Cell Biol; 2002 Mar; 21(3):163-88. PubMed ID: 12015895
[TBL] [Abstract][Full Text] [Related]
19. Characterization of halted T7 RNA polymerase elongation complexes reveals multiple factors that contribute to stability.
Mentesana PE; Chin-Bow ST; Sousa R; McAllister WT
J Mol Biol; 2000 Oct; 302(5):1049-62. PubMed ID: 11183774
[TBL] [Abstract][Full Text] [Related]
20. Influence of global DNA topology on cruciform formation in supercoiled DNA.
Oussatcheva EA; Pavlicek J; Sankey OF; Sinden RR; Lyubchenko YL; Potaman VN
J Mol Biol; 2004 May; 338(4):735-43. PubMed ID: 15099741
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
