318 related articles for article (PubMed ID: 30850542)
21. Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats.
Reddy K; Tam M; Bowater RP; Barber M; Tomlinson M; Nichol Edamura K; Wang YH; Pearson CE
Nucleic Acids Res; 2011 Mar; 39(5):1749-62. PubMed ID: 21051337
[TBL] [Abstract][Full Text] [Related]
22. Multiple DNA conformational changes induced by an initiator protein precede the nicking reaction in a rolling circle replication origin.
Higashitani A; Greenstein D; Hirokawa H; Asano S; Horiuchi K
J Mol Biol; 1994 Apr; 237(4):388-400. PubMed ID: 8151700
[TBL] [Abstract][Full Text] [Related]
23. Extrusion of an imperfect palindrome to a cruciform in superhelical DNA: complete determination of energetics using a statistical mechanical model.
Benham CJ; Savitt AG; Bauer WR
J Mol Biol; 2002 Feb; 316(3):563-81. PubMed ID: 11866518
[TBL] [Abstract][Full Text] [Related]
24. Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription.
Berkhout B; Vastenhouw NL; Klasens BI; Huthoff H
RNA; 2001 Aug; 7(8):1097-114. PubMed ID: 11497429
[TBL] [Abstract][Full Text] [Related]
25. R loops: new modulators of genome dynamics and function.
Santos-Pereira JM; Aguilera A
Nat Rev Genet; 2015 Oct; 16(10):583-97. PubMed ID: 26370899
[TBL] [Abstract][Full Text] [Related]
26. The potential of the cruciform structure formation as an important factor influencing p53 sequence-specific binding to natural DNA targets.
Jagelská EB; Pivonková H; Fojta M; Brázda V
Biochem Biophys Res Commun; 2010 Jan; 391(3):1409-14. PubMed ID: 20026061
[TBL] [Abstract][Full Text] [Related]
27. Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions.
Benham C; Kohwi-Shigematsu T; Bode J
J Mol Biol; 1997 Nov; 274(2):181-96. PubMed ID: 9398526
[TBL] [Abstract][Full Text] [Related]
28. Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology.
Drolet M
Mol Microbiol; 2006 Feb; 59(3):723-30. PubMed ID: 16420346
[TBL] [Abstract][Full Text] [Related]
29. Applicability of superhelical model for regulation of gene expression.
Fukada M
J Theor Biol; 1984 Aug; 109(3):431-52. PubMed ID: 6206357
[TBL] [Abstract][Full Text] [Related]
30. Energetics of the strand separation transition in superhelical DNA.
Benham CJ
J Mol Biol; 1992 Jun; 225(3):835-47. PubMed ID: 1602485
[TBL] [Abstract][Full Text] [Related]
31. A semiflexible polymer model applied to loop formation in DNA hairpins.
Kuznetsov SV; Shen Y; Benight AS; Ansari A
Biophys J; 2001 Nov; 81(5):2864-75. PubMed ID: 11606297
[TBL] [Abstract][Full Text] [Related]
32. R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Yu K; Chedin F; Hsieh CL; Wilson TE; Lieber MR
Nat Immunol; 2003 May; 4(5):442-51. PubMed ID: 12679812
[TBL] [Abstract][Full Text] [Related]
33. Topological constraints in nucleic acid hybridization kinetics.
Bois JS; Venkataraman S; Choi HM; Spakowitz AJ; Wang ZG; Pierce NA
Nucleic Acids Res; 2005; 33(13):4090-5. PubMed ID: 16043632
[TBL] [Abstract][Full Text] [Related]
34. Folding of single-stranded DNA quadruplexes containing an autonomously stable mini-hairpin loop.
Balkwill GD; Garner TP; Searle MS
Mol Biosyst; 2009 May; 5(5):542-7. PubMed ID: 19381368
[TBL] [Abstract][Full Text] [Related]
35. Transcription-driven twin supercoiling of a DNA loop: a Brownian dynamics study.
Mielke SP; Fink WH; Krishnan VV; Grønbech-Jensen N; Benham CJ
J Chem Phys; 2004 Oct; 121(16):8104-12. PubMed ID: 15485274
[TBL] [Abstract][Full Text] [Related]
36. Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Sanz LA; Hartono SR; Lim YW; Steyaert S; Rajpurkar A; Ginno PA; Xu X; Chédin F
Mol Cell; 2016 Jul; 63(1):167-78. PubMed ID: 27373332
[TBL] [Abstract][Full Text] [Related]
37. The dynamic response of upstream DNA to transcription-generated torsional stress.
Kouzine F; Liu J; Sanford S; Chung HJ; Levens D
Nat Struct Mol Biol; 2004 Nov; 11(11):1092-100. PubMed ID: 15502847
[TBL] [Abstract][Full Text] [Related]
38. DNA superhelicity.
Benham CJ
Nucleic Acids Res; 2024 Jan; 52(1):22-48. PubMed ID: 37994702
[TBL] [Abstract][Full Text] [Related]
39. Competition between the RNA transcript and the nontemplate DNA strand during R-loop formation in vitro: a nick can serve as a strong R-loop initiation site.
Roy D; Zhang Z; Lu Z; Hsieh CL; Lieber MR
Mol Cell Biol; 2010 Jan; 30(1):146-59. PubMed ID: 19841062
[TBL] [Abstract][Full Text] [Related]
40. Conformational analysis of DNA-trinucleotide-hairpin-loop structures using a continuum solvent model.
Zacharias M
Biophys J; 2001 May; 80(5):2350-63. PubMed ID: 11325735
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
