These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

297 related articles for article (PubMed ID: 30864654)

  • 1. Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.
    Zhou B; Ho SS; Greer SU; Spies N; Bell JM; Zhang X; Zhu X; Arthur JG; Byeon S; Pattni R; Saha I; Huang Y; Song G; Perrin D; Wong WH; Ji HP; Abyzov A; Urban AE
    Nucleic Acids Res; 2019 May; 47(8):3846-3861. PubMed ID: 30864654
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.
    Zhou B; Ho SS; Greer SU; Zhu X; Bell JM; Arthur JG; Spies N; Zhang X; Byeon S; Pattni R; Ben-Efraim N; Haney MS; Haraksingh RR; Song G; Ji HP; Perrin D; Wong WH; Abyzov A; Urban AE
    Genome Res; 2019 Mar; 29(3):472-484. PubMed ID: 30737237
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Next generation mapping reveals novel large genomic rearrangements in prostate cancer.
    Jaratlerdsiri W; Chan EKF; Petersen DC; Yang C; Croucher PI; Bornman MSR; Sheth P; Hayes VM
    Oncotarget; 2017 Apr; 8(14):23588-23602. PubMed ID: 28423598
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multi-platform discovery of haplotype-resolved structural variation in human genomes.
    Chaisson MJP; Sanders AD; Zhao X; Malhotra A; Porubsky D; Rausch T; Gardner EJ; Rodriguez OL; Guo L; Collins RL; Fan X; Wen J; Handsaker RE; Fairley S; Kronenberg ZN; Kong X; Hormozdiari F; Lee D; Wenger AM; Hastie AR; Antaki D; Anantharaman T; Audano PA; Brand H; Cantsilieris S; Cao H; Cerveira E; Chen C; Chen X; Chin CS; Chong Z; Chuang NT; Lambert CC; Church DM; Clarke L; Farrell A; Flores J; Galeev T; Gorkin DU; Gujral M; Guryev V; Heaton WH; Korlach J; Kumar S; Kwon JY; Lam ET; Lee JE; Lee J; Lee WP; Lee SP; Li S; Marks P; Viaud-Martinez K; Meiers S; Munson KM; Navarro FCP; Nelson BJ; Nodzak C; Noor A; Kyriazopoulou-Panagiotopoulou S; Pang AWC; Qiu Y; Rosanio G; Ryan M; Stütz A; Spierings DCJ; Ward A; Welch AE; Xiao M; Xu W; Zhang C; Zhu Q; Zheng-Bradley X; Lowy E; Yakneen S; McCarroll S; Jun G; Ding L; Koh CL; Ren B; Flicek P; Chen K; Gerstein MB; Kwok PY; Lansdorp PM; Marth GT; Sebat J; Shi X; Bashir A; Ye K; Devine SE; Talkowski ME; Mills RE; Marschall T; Korbel JO; Eichler EE; Lee C
    Nat Commun; 2019 Apr; 10(1):1784. PubMed ID: 30992455
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Characteristics of de novo structural changes in the human genome.
    Kloosterman WP; Francioli LC; Hormozdiari F; Marschall T; Hehir-Kwa JY; Abdellaoui A; Lameijer EW; Moed MH; Koval V; Renkens I; van Roosmalen MJ; Arp P; Karssen LC; Coe BP; Handsaker RE; Suchiman ED; Cuppen E; Thung DT; McVey M; Wendl MC; ; Uitterlinden A; van Duijn CM; Swertz MA; Wijmenga C; van Ommen GB; Slagboom PE; Boomsma DI; Schönhuth A; Eichler EE; de Bakker PI; Ye K; Guryev V
    Genome Res; 2015 Jun; 25(6):792-801. PubMed ID: 25883321
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Allele-Specific Quantification of Structural Variations in Cancer Genomes.
    Li Y; Zhou S; Schwartz DC; Ma J
    Cell Syst; 2016 Jul; 3(1):21-34. PubMed ID: 27453446
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.
    Adey A; Burton JN; Kitzman JO; Hiatt JB; Lewis AP; Martin BK; Qiu R; Lee C; Shendure J
    Nature; 2013 Aug; 500(7461):207-11. PubMed ID: 23925245
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A high-quality human reference panel reveals the complexity and distribution of genomic structural variants.
    Hehir-Kwa JY; Marschall T; Kloosterman WP; Francioli LC; Baaijens JA; Dijkstra LJ; Abdellaoui A; Koval V; Thung DT; Wardenaar R; Renkens I; Coe BP; Deelen P; de Ligt J; Lameijer EW; van Dijk F; Hormozdiari F; ; Uitterlinden AG; van Duijn CM; Eichler EE; de Bakker PI; Swertz MA; Wijmenga C; van Ommen GB; Slagboom PE; Boomsma DI; Schönhuth A; Ye K; Guryev V
    Nat Commun; 2016 Oct; 7():12989. PubMed ID: 27708267
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy.
    Bell JM; Lau BT; Greer SU; Wood-Bouwens C; Xia LC; Connolly ID; Gephart MH; Ji HP
    Nucleic Acids Res; 2017 Nov; 45(19):e162. PubMed ID: 28977555
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SvABA: genome-wide detection of structural variants and indels by local assembly.
    Wala JA; Bandopadhayay P; Greenwald NF; O'Rourke R; Sharpe T; Stewart C; Schumacher S; Li Y; Weischenfeldt J; Yao X; Nusbaum C; Campbell P; Getz G; Meyerson M; Zhang CZ; Imielinski M; Beroukhim R
    Genome Res; 2018 Apr; 28(4):581-591. PubMed ID: 29535149
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Complete genome phasing of family quartet by combination of genetic, physical and population-based phasing analysis.
    Lajugie J; Mukhopadhyay R; Schizas M; Lailler N; Fourel N; Bouhassira EE
    PLoS One; 2013; 8(5):e64571. PubMed ID: 23741343
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DELLY: structural variant discovery by integrated paired-end and split-read analysis.
    Rausch T; Zichner T; Schlattl A; Stütz AM; Benes V; Korbel JO
    Bioinformatics; 2012 Sep; 28(18):i333-i339. PubMed ID: 22962449
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencing.
    Valls-Margarit J; Galván-Femenía I; Matías-Sánchez D; Blay N; Puiggròs M; Carreras A; Salvoro C; Cortés B; Amela R; Farre X; Lerga-Jaso J; Puig M; Sánchez-Herrero JF; Moreno V; Perucho M; Sumoy L; Armengol L; Delaneau O; Cáceres M; de Cid R; Torrents D
    Nucleic Acids Res; 2022 Mar; 50(5):2464-2479. PubMed ID: 35176773
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A hybrid approach for de novo human genome sequence assembly and phasing.
    Mostovoy Y; Levy-Sakin M; Lam J; Lam ET; Hastie AR; Marks P; Lee J; Chu C; Lin C; Džakula Ž; Cao H; Schlebusch SA; Giorda K; Schnall-Levin M; Wall JD; Kwok PY
    Nat Methods; 2016 Jul; 13(7):587-90. PubMed ID: 27159086
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Toward Recovering Allele-specific Cancer Genome Graphs.
    Rajaraman A; Ma J
    J Comput Biol; 2018 Jul; 25(7):624-636. PubMed ID: 29658776
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A comprehensively molecular haplotype-resolved genome of a European individual.
    Suk EK; McEwen GK; Duitama J; Nowick K; Schulz S; Palczewski S; Schreiber S; Holloway DT; McLaughlin S; Peckham H; Lee C; Huebsch T; Hoehe MR
    Genome Res; 2011 Oct; 21(10):1672-85. PubMed ID: 21813624
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
    Ebert P; Audano PA; Zhu Q; Rodriguez-Martin B; Porubsky D; Bonder MJ; Sulovari A; Ebler J; Zhou W; Serra Mari R; Yilmaz F; Zhao X; Hsieh P; Lee J; Kumar S; Lin J; Rausch T; Chen Y; Ren J; Santamarina M; Höps W; Ashraf H; Chuang NT; Yang X; Munson KM; Lewis AP; Fairley S; Tallon LJ; Clarke WE; Basile AO; Byrska-Bishop M; Corvelo A; Evani US; Lu TY; Chaisson MJP; Chen J; Li C; Brand H; Wenger AM; Ghareghani M; Harvey WT; Raeder B; Hasenfeld P; Regier AA; Abel HJ; Hall IM; Flicek P; Stegle O; Gerstein MB; Tubio JMC; Mu Z; Li YI; Shi X; Hastie AR; Ye K; Chong Z; Sanders AD; Zody MC; Talkowski ME; Mills RE; Devine SE; Lee C; Korbel JO; Marschall T; Eichler EE
    Science; 2021 Apr; 372(6537):. PubMed ID: 33632895
    [TBL] [Abstract][Full Text] [Related]  

  • 18. QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
    Colella S; Yau C; Taylor JM; Mirza G; Butler H; Clouston P; Bassett AS; Seller A; Holmes CC; Ragoussis J
    Nucleic Acids Res; 2007; 35(6):2013-25. PubMed ID: 17341461
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia.
    Huang D; Ovcharenko I
    BMC Genomics; 2017 Mar; 18(1):236. PubMed ID: 28302063
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Whole genome sequence analysis of BT-474 using complete Genomics' standard and long fragment read technologies.
    Ciotlos S; Mao Q; Zhang RY; Li Z; Chin R; Gulbahce N; Liu SJ; Drmanac R; Peters BA
    Gigascience; 2016; 5():8. PubMed ID: 26865974
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.