BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

651 related articles for article (PubMed ID: 30865832)

  • 1. General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins.
    Shabane PS; Izadi S; Onufriev AV
    J Chem Theory Comput; 2019 Apr; 15(4):2620-2634. PubMed ID: 30865832
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Conformational Preferences of an Intrinsically Disordered Protein Domain: A Case Study for Modern Force Fields.
    Gopal SM; Wingbermühle S; Schnatwinkel J; Juber S; Herrmann C; Schäfer LV
    J Phys Chem B; 2021 Jan; 125(1):24-35. PubMed ID: 33382616
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Significant compaction of H4 histone tail upon charge neutralization by acetylation and its mimics, possible effects on chromatin structure.
    Shabane PS; Onufriev AV
    J Mol Biol; 2021 Mar; 433(6):166683. PubMed ID: 33096105
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 1. NMR and MD characterization of the complex between the c-Crk N-SH3 domain and the peptide Sos.
    Xue Y; Yuwen T; Zhu F; Skrynnikov NR
    Biochemistry; 2014 Oct; 53(41):6473-95. PubMed ID: 25207671
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Using NMR diffusion data to validate MD models of disordered proteins: Test case of N-terminal tail of histone H4.
    Lebedenko OO; Salikov VA; Izmailov SA; Podkorytov IS; Skrynnikov NR
    Biophys J; 2024 Jan; 123(1):80-100. PubMed ID: 37990496
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins.
    Rahman MU; Rehman AU; Liu H; Chen HF
    J Chem Inf Model; 2020 Oct; 60(10):4912-4923. PubMed ID: 32816485
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Development of Charge-Augmented Three-Point Water Model (CAIPi3P) for Accurate Simulations of Intrinsically Disordered Proteins.
    de Souza JV; Zariquiey FS; Bronowska AK
    Int J Mol Sci; 2020 Aug; 21(17):. PubMed ID: 32859072
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Effects of force fields on the conformational and dynamic properties of amyloid β(1-40) dimer explored by replica exchange molecular dynamics simulations.
    Watts CR; Gregory A; Frisbie C; Lovas S
    Proteins; 2018 Mar; 86(3):279-300. PubMed ID: 29235155
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Modeling structural interconversion in Alzheimers' amyloid beta peptide with classical and intrinsically disordered protein force fields.
    Wu KY; Doan D; Medrano M; Chang CA
    J Biomol Struct Dyn; 2022; 40(20):10005-10022. PubMed ID: 34152264
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular Dynamics Simulations of Intrinsically Disordered Proteins: Force Field Evaluation and Comparison with Experiment.
    Henriques J; Cragnell C; Skepö M
    J Chem Theory Comput; 2015 Jul; 11(7):3420-31. PubMed ID: 26575776
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Systematic Differences between Current Molecular Dynamics Force Fields To Represent Local Properties of Intrinsically Disordered Proteins.
    Yu L; Li DW; Brüschweiler R
    J Phys Chem B; 2021 Jan; 125(3):798-804. PubMed ID: 33444020
    [TBL] [Abstract][Full Text] [Related]  

  • 12. How accurate are your simulations? Effects of confined aqueous volume and AMBER FF99SB and CHARMM22/CMAP force field parameters on structural ensembles of intrinsically disordered proteins: Amyloid-β
    Weber OC; Uversky VN
    Intrinsically Disord Proteins; 2017; 5(1):e1377813. PubMed ID: 30250773
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cosolvent Effects on the Growth of Protein Aggregates Formed by a Single Domain Globular Protein and an Intrinsically Disordered Protein.
    Mondal B; Reddy G
    J Phys Chem B; 2019 Mar; 123(9):1950-1960. PubMed ID: 30730736
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics.
    Han M; Xu J; Ren Y; Li J
    J Mol Graph Model; 2016 Jul; 68():114-127. PubMed ID: 27423742
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins.
    Song D; Luo R; Chen HF
    J Chem Inf Model; 2017 May; 57(5):1166-1178. PubMed ID: 28448138
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational Ensembles.
    Chan-Yao-Chong M; Durand D; Ha-Duong T
    J Chem Inf Model; 2019 May; 59(5):1743-1758. PubMed ID: 30840442
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computational Studies of Intrinsically Disordered Proteins.
    Duong VT; Chen Z; Thapa MT; Luo R
    J Phys Chem B; 2018 Nov; 122(46):10455-10469. PubMed ID: 30372613
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments.
    Granata D; Baftizadeh F; Habchi J; Galvagnion C; De Simone A; Camilloni C; Laio A; Vendruscolo M
    Sci Rep; 2015 Oct; 5():15449. PubMed ID: 26498066
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Intrinsically Disordered Landscapes for Human CD4 Receptor Peptide.
    Joseph JA; Wales DJ
    J Phys Chem B; 2018 Dec; 122(50):11906-11921. PubMed ID: 30433786
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Role of Electrostatic Interactions in Binding of Peptides and Intrinsically Disordered Proteins to Their Folded Targets: 2. The Model of Encounter Complex Involving the Double Mutant of the c-Crk N-SH3 Domain and Peptide Sos.
    Yuwen T; Xue Y; Skrynnikov NR
    Biochemistry; 2016 Mar; 55(12):1784-800. PubMed ID: 26910732
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.