239 related articles for article (PubMed ID: 30905509)
1. Extensive Recovery of Embryonic Enhancer and Gene Memory Stored in Hypomethylated Enhancer DNA.
Jadhav U; Cavazza A; Banerjee KK; Xie H; O'Neill NK; Saenz-Vash V; Herbert Z; Madha S; Orkin SH; Zhai H; Shivdasani RA
Mol Cell; 2019 May; 74(3):542-554.e5. PubMed ID: 30905509
[TBL] [Abstract][Full Text] [Related]
2. Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case study.
Capra JA
BMC Genomics; 2015 Feb; 16(1):104. PubMed ID: 25765133
[TBL] [Abstract][Full Text] [Related]
3. CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity.
Yu W; Briones V; Lister R; McIntosh C; Han Y; Lee EY; Ren J; Terashima M; Leighty RM; Ecker JR; Muegge K
Proc Natl Acad Sci U S A; 2014 Apr; 111(16):5890-5. PubMed ID: 24711395
[TBL] [Abstract][Full Text] [Related]
4. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues.
Hon GC; Rajagopal N; Shen Y; McCleary DF; Yue F; Dang MD; Ren B
Nat Genet; 2013 Oct; 45(10):1198-206. PubMed ID: 23995138
[TBL] [Abstract][Full Text] [Related]
5. Polycomb repressive complex 2 epigenomic signature defines age-associated hypermethylation and gene expression changes.
Dozmorov MG
Epigenetics; 2015; 10(6):484-95. PubMed ID: 25880792
[TBL] [Abstract][Full Text] [Related]
6. DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.
Xie M; Hong C; Zhang B; Lowdon RF; Xing X; Li D; Zhou X; Lee HJ; Maire CL; Ligon KL; Gascard P; Sigaroudinia M; Tlsty TD; Kadlecek T; Weiss A; O'Geen H; Farnham PJ; Madden PA; Mungall AJ; Tam A; Kamoh B; Cho S; Moore R; Hirst M; Marra MA; Costello JF; Wang T
Nat Genet; 2013 Jul; 45(7):836-41. PubMed ID: 23708189
[TBL] [Abstract][Full Text] [Related]
7. DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism.
Sharifi-Zarchi A; Gerovska D; Adachi K; Totonchi M; Pezeshk H; Taft RJ; Schöler HR; Chitsaz H; Sadeghi M; Baharvand H; Araúzo-Bravo MJ
BMC Genomics; 2017 Dec; 18(1):964. PubMed ID: 29233090
[TBL] [Abstract][Full Text] [Related]
8. The recently identified modifier of murine metastable epialleles, Rearranged L-Myc Fusion, is involved in maintaining epigenetic marks at CpG island shores and enhancers.
Harten SK; Oey H; Bourke LM; Bharti V; Isbel L; Daxinger L; Faou P; Robertson N; Matthews JM; Whitelaw E
BMC Biol; 2015 Mar; 13():21. PubMed ID: 25857663
[TBL] [Abstract][Full Text] [Related]
9. Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Creyghton MP; Cheng AW; Welstead GG; Kooistra T; Carey BW; Steine EJ; Hanna J; Lodato MA; Frampton GM; Sharp PA; Boyer LA; Young RA; Jaenisch R
Proc Natl Acad Sci U S A; 2010 Dec; 107(50):21931-6. PubMed ID: 21106759
[TBL] [Abstract][Full Text] [Related]
10. Identification of activated enhancers and linked transcription factors in breast, prostate, and kidney tumors by tracing enhancer networks using epigenetic traits.
Rhie SK; Guo Y; Tak YG; Yao L; Shen H; Coetzee GA; Laird PW; Farnham PJ
Epigenetics Chromatin; 2016; 9():50. PubMed ID: 27833659
[TBL] [Abstract][Full Text] [Related]
11. Widespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition.
Zhang B; Wu X; Zhang W; Shen W; Sun Q; Liu K; Zhang Y; Wang Q; Li Y; Meng A; Xie W
Mol Cell; 2018 Nov; 72(4):673-686.e6. PubMed ID: 30444999
[TBL] [Abstract][Full Text] [Related]
12. Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites.
Aday AW; Zhu LJ; Lakshmanan A; Wang J; Lawson ND
Dev Biol; 2011 Sep; 357(2):450-62. PubMed ID: 21435340
[TBL] [Abstract][Full Text] [Related]
13. Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells.
Xu J; Watts JA; Pope SD; Gadue P; Kamps M; Plath K; Zaret KS; Smale ST
Genes Dev; 2009 Dec; 23(24):2824-38. PubMed ID: 20008934
[TBL] [Abstract][Full Text] [Related]
14. Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers.
Sérandour AA; Avner S; Percevault F; Demay F; Bizot M; Lucchetti-Miganeh C; Barloy-Hubler F; Brown M; Lupien M; Métivier R; Salbert G; Eeckhoute J
Genome Res; 2011 Apr; 21(4):555-65. PubMed ID: 21233399
[TBL] [Abstract][Full Text] [Related]
15. Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells.
King AD; Huang K; Rubbi L; Liu S; Wang CY; Wang Y; Pellegrini M; Fan G
Cell Rep; 2016 Sep; 17(1):289-302. PubMed ID: 27681438
[TBL] [Abstract][Full Text] [Related]
16. A unique chromatin signature uncovers early developmental enhancers in humans.
Rada-Iglesias A; Bajpai R; Swigut T; Brugmann SA; Flynn RA; Wysocka J
Nature; 2011 Feb; 470(7333):279-83. PubMed ID: 21160473
[TBL] [Abstract][Full Text] [Related]
17. An epigenetic switch regulates de novo DNA methylation at a subset of pluripotency gene enhancers during embryonic stem cell differentiation.
Petell CJ; Alabdi L; He M; San Miguel P; Rose R; Gowher H
Nucleic Acids Res; 2016 Sep; 44(16):7605-17. PubMed ID: 27179026
[TBL] [Abstract][Full Text] [Related]
18. Improved regulatory element prediction based on tissue-specific local epigenomic signatures.
He Y; Gorkin DU; Dickel DE; Nery JR; Castanon RG; Lee AY; Shen Y; Visel A; Pennacchio LA; Ren B; Ecker JR
Proc Natl Acad Sci U S A; 2017 Feb; 114(9):E1633-E1640. PubMed ID: 28193886
[TBL] [Abstract][Full Text] [Related]
19. Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency.
Bell E; Curry EW; Megchelenbrink W; Jouneau L; Brochard V; Tomaz RA; Mau KHT; Atlasi Y; de Souza RA; Marks H; Stunnenberg HG; Jouneau A; Azuara V
Nat Commun; 2020 Feb; 11(1):1112. PubMed ID: 32111830
[TBL] [Abstract][Full Text] [Related]
20. Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function.
Preger-Ben Noon E; Sabarís G; Ortiz DM; Sager J; Liebowitz A; Stern DL; Frankel N
Cell Rep; 2018 Mar; 22(11):3021-3031. PubMed ID: 29539428
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
