These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

389 related articles for article (PubMed ID: 30911759)

  • 1. Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications.
    Liang Z; Verkhivker GM; Hu G
    Brief Bioinform; 2020 May; 21(3):815-835. PubMed ID: 30911759
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exploring and Learning the Universe of Protein Allostery Using Artificial Intelligence Augmented Biophysical and Computational Approaches.
    Agajanian S; Alshahrani M; Bai F; Tao P; Verkhivker GM
    J Chem Inf Model; 2023 Mar; 63(5):1413-1428. PubMed ID: 36827465
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Interrogating Regulatory Mechanisms in Signaling Proteins by Allosteric Inhibitors and Activators: A Dynamic View Through the Lens of Residue Interaction Networks.
    Astl L; Tse A; Verkhivker GM
    Adv Exp Med Biol; 2019; 1163():187-223. PubMed ID: 31707705
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.
    Stetz G; Verkhivker GM
    PLoS Comput Biol; 2017 Jan; 13(1):e1005299. PubMed ID: 28095400
    [TBL] [Abstract][Full Text] [Related]  

  • 5. From Deep Mutational Mapping of Allosteric Protein Landscapes to Deep Learning of Allostery and Hidden Allosteric Sites: Zooming in on "Allosteric Intersection" of Biochemical and Big Data Approaches.
    Verkhivker G; Alshahrani M; Gupta G; Xiao S; Tao P
    Int J Mol Sci; 2023 Apr; 24(9):. PubMed ID: 37175454
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting Functional Dynamics in Proteins with Comparative Perturbed-Ensembles Analysis.
    Yao XQ; Hamelberg D
    Acc Chem Res; 2019 Dec; 52(12):3455-3464. PubMed ID: 31793290
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Understanding G Protein-Coupled Receptor Allostery via Molecular Dynamics Simulations: Implications for Drug Discovery.
    Basith S; Lee Y; Choi S
    Methods Mol Biol; 2018; 1762():455-472. PubMed ID: 29594786
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Biophysical simulations and structure-based modeling of residue interaction networks in the tumor suppressor proteins reveal functional role of cancer mutation hotspots in molecular communication.
    Verkhivker GM
    Biochim Biophys Acta Gen Subj; 2019 Jan; 1863(1):210-225. PubMed ID: 30339916
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.
    Stetz G; Verkhivker GM
    PLoS One; 2015; 10(11):e0143752. PubMed ID: 26619280
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Exploring Molecular Mechanisms of Paradoxical Activation in the BRAF Kinase Dimers: Atomistic Simulations of Conformational Dynamics and Modeling of Allosteric Communication Networks and Signaling Pathways.
    Tse A; Verkhivker GM
    PLoS One; 2016; 11(11):e0166583. PubMed ID: 27861609
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Allosteric Mechanism of the Hsp90 Chaperone Interactions with Cochaperones and Client Proteins by Modulating Communication Spines of Coupled Regulatory Switches: Integrative Atomistic Modeling of Hsp90 Signaling in Dynamic Interaction Networks.
    Astl L; Stetz G; Verkhivker GM
    J Chem Inf Model; 2020 Jul; 60(7):3616-3631. PubMed ID: 32519853
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Data-driven computational analysis of allosteric proteins by exploring protein dynamics, residue coevolution and residue interaction networks.
    Astl L; Verkhivker GM
    Biochim Biophys Acta Gen Subj; 2019 Jul; ():. PubMed ID: 31330173
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular Machines.
    Thirumalai D; Hyeon C; Zhuravlev PI; Lorimer GH
    Chem Rev; 2019 Jun; 119(12):6788-6821. PubMed ID: 31017391
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ensemble-based modeling and rigidity decomposition of allosteric interaction networks and communication pathways in cyclin-dependent kinases: Differentiating kinase clients of the Hsp90-Cdc37 chaperone.
    Stetz G; Tse A; Verkhivker GM
    PLoS One; 2017; 12(11):e0186089. PubMed ID: 29095844
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Concepts, Practices, and Interactive Tutorial for Allosteric Network Analysis of Molecular Dynamics Simulations.
    Botello-Smith WM; Luo YL
    Methods Mol Biol; 2021; 2302():311-334. PubMed ID: 33877635
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Allosteric communication and signal transduction in proteins.
    Wu N; Barahona M; Yaliraki SN
    Curr Opin Struct Biol; 2024 Feb; 84():102737. PubMed ID: 38171189
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Integrating protein structural dynamics and evolutionary analysis with Bio3D.
    Skjærven L; Yao XQ; Scarabelli G; Grant BJ
    BMC Bioinformatics; 2014 Dec; 15(1):399. PubMed ID: 25491031
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HPC Analysis of Multiple Binding Sites Communication and Allosteric Modulations in Drug Design: The HSP Case Study.
    Chiappori F; Milanesi L; Merelli I
    Curr Drug Targets; 2016; 17(14):1610-1625. PubMed ID: 26648062
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Functional Role and Hierarchy of the Intermolecular Interactions in Binding of Protein Kinase Clients to the Hsp90-Cdc37 Chaperone: Structure-Based Network Modeling of Allosteric Regulation.
    Stetz G; Verkhivker GM
    J Chem Inf Model; 2018 Feb; 58(2):405-421. PubMed ID: 29432007
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Emerging computational approaches for the study of protein allostery.
    Collier G; Ortiz V
    Arch Biochem Biophys; 2013 Oct; 538(1):6-15. PubMed ID: 23933229
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.